Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Juglans_20regia_20[refseq_20GCF_5F001411555.1_202015-10-22] 105,803 sequences; 699,672,627 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq1014 95.1 1e-14 seq1025 86.0 6e-12 seq55116 82.4 8e-11 >seq1014 Length=2264649 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047 ||||| || ||||| ||||||||||| || || ||| ||||| || ||||| || Sbjct 109931 GTAGACTCCTTTTGGATGTTGTAATCCGCCAGAGTCCTCCCATCTTCAAGCTGTTTCCCC 109872 Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107 || |||| || | |||||||| ||||| || ||||| ||||| ||| ||| ||| Sbjct 109871 GCGAAGATAAGCCTCTGCTGATCCGGAGGGATTCCTTCCTTGTCCTGAATCTTTGCTTTC 109812 Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167 | | || | |||||| | ||||| || | || | ||||| || |||||||| Sbjct 109811 ACATTATCAATCGTGTCAGAACTCTCTACCTCCAAGGTAATGGTCTTCCCAGTCAATGTC 109752 Query 143168 TTTACGAATATTTGCAT 143184 || || ||||| ||||| Sbjct 109751 TTCACAAATATCTGCAT 109735 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 142976 ACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCG 143035 || || |||| || ||||||||||| ||||| || || || |||| |||||| Sbjct 108803 ACCAAGTGAAGGGTGGATTCTTTTTGGATGTTATAGTCAGCCAAAGTGCGACCATCTTCG 108744 Query 143036 AGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTA 143095 || || ||||||||| |||| || | ||||| || || || ||||| || ||||| Sbjct 108743 AGCTGCTTACCAGCAAAGATGAGCCTCTGCTGGTCCGGTGGAATGCCCTCCTTGTCCTGG 108684 Query 143096 ATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTG 143155 ||||| ||||| | || | ||||||| | ||| || |||| || | ||||| Sbjct 108683 ATTTTGGCTTTTACATTGTCAATAGTGTCCGAGCTTTCCACCTCAAGGGTGATTGTCTTT 108624 Query 143156 CCGGTCAATGTTTTTACGAATATTTGCAT 143184 ||||| | || || || ||||| ||||| Sbjct 108623 CCGGTTAGAGTCTTAACAAATATCTGCAT 108595 >seq1025 Length=2429094 Score = 86.0 bits (94), Expect = 6e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047 || || || || ||||| |||||||| || || || ||||| || |||||||| Sbjct 1182797 GTGGACTCCTTCTGTATATTGTAATCCGCCAGAGTCCTTCCATCTTCAAGCTGTTTACCC 1182738 Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107 ||| |||| || | |||||||| |||||||| ||||||||||| ||| ||| ||| Sbjct 1182737 GCAAAGATAAGCCTCTGCTGATCTGGAGGTATTCCTTCTTTGTCCTGAATCTTTGCTTTC 1182678 Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167 | | || | || || | || || || | || | ||||| || ||||||||| Sbjct 1182677 ACATTATCAATTGTATCAGAACTCTCGACCTCCAAGGTAATGGTCTTCCCAGTCAATGTT 1182618 Query 143168 TTTACGAATATTTGCAT 143184 || || || || ||||| Sbjct 1182617 TTCACAAAGATCTGCAT 1182601 >seq55116 Length=591887 Score = 82.4 bits (90), Expect = 8e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 142976 ACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCG 143035 || ||||||| ||||| ||||| || ||||||||||| || ||| || || || Sbjct 229761 ACCAAATGAAGAGTAGACTCTTTCTGGATGTTGTAATCAGCCAATGTCCTGCCATCCTCA 229820 Query 143036 AGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTA 143095 ||||| || |||||| | |||| | ||||| |||||||| |||||||| || || | Sbjct 229821 AGTTGCTTTCCAGCAAATATCAACCTCTGCTGGTCGGGAGGAATGCCTTCCTTATCCTGA 229880 Query 143096 ATTTT 143100 ||||| Sbjct 229881 ATTTT 229885 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506343854442960