Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Juglans_20regia_20[refseq_20GCF_5F001411555.1_202015-10-22] 105,803 sequences; 699,672,627 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq54992 170 3e-37 seq4953 95.1 2e-14 seq54143 89.7 8e-13 >seq54992 Length=480207 Score = 170 bits (188), Expect = 3e-37 Identities = 397/583 (68%), Gaps = 18/583 (3%) Strand=Plus/Minus Query 124996 TGTTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTT 125055 |||| || ||| ||| | || || |||||||||||||| || ||| ||||||| || | Sbjct 460658 TGTTCCCGATCCAGTACCCGGAAATATGGGAAATGTACAAGAAAGCTGAGGCCTCATTCT 460599 Query 125056 GGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTG 125115 |||| | ||| ||||| || || ||| ||||||| | ||||||| | | || | | Sbjct 460598 GGACCGCCGAGGAGGTTGACCTCTCCGAGGACCTTTCTCATTGGGAATCCCTTTCTCCCG 460539 Query 125116 AAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCG 125175 | ||| | | || || || ||||| | ||||||||||||| ||| || || |||| Sbjct 460538 AC---GAGAAACACTTCATTTCCCACATCCTTGCCTTCTTTGCCGCCTCTGACGGCATCG 460482 Query 125176 TCAACGACAATCT-GTTGACACGATTCTCTCAAGAGTTGACCAT-TC-CAGAGGTGTCGT 125232 | || ||||| | || || | ||| | ||| | ||| || | |||| || Sbjct 460481 TTTTGGAGAATCTCGCTGGCAGG-TTCATGAAGGAGGT--CCAGGTCGCCGAGGCC-CGC 460426 Query 125233 GCTTT-TACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTG 125291 || || ||||| ||||| ||| || ||||| | ||||| || |||||| | || Sbjct 460425 GCCTTCTACGGCTTCCAGATCGCCATCGAGAATATTCACTCCGAGATGTACAGTCTTTTG 460366 Query 125292 ATTGACATGTACATTCGCGA-TCCGCAACGTAAACACATGCTCTTTAACGCAATCGACAC 125350 | || | ||||| || ||||| | || ||| ||||| |||| ||||| || Sbjct 460365 CTCGAGACCTACATCAAGGACTCCGCCCAG-AAGCACCGCCTCTTCCACGCCATCGAGAC 460307 Query 125351 GGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTC 125410 || || | | ||| ||||| || |||| | || |||||||| | | | |||| Sbjct 460306 CGTCCCTTGCGTCGCTAAGAAGGCACAGTGGGCCCTGCGCTGGATCGACGGGGCCGAGTC 460247 Query 125411 TTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAG 125470 | ||| || | | || || ||||| ||||| || |||||||| || || || Sbjct 460246 CTT---CGCTGAGCGCATCGTCGCTTTCGCGTGTGTAGAAGGTATCTTCTTCTCCGGAAG 460190 Query 125471 TTT-TGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTA 125529 || |||| ||||||| ||| | ||||||||||| | |||||||| ||||| | | Sbjct 460189 CTTCTGCG-CCATCTTCTGGTTGAAGAAGCGCGGCTTGATGCCCGGTCTGACCTTCTCCA 460131 Query 125530 ACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGC 125572 ||||| | || || ||||||||||| || ||||| ||||| || Sbjct 460130 ACGAGCTGATCTCGCGAGACGAGGGGCTCCACTGCGACTTCGC 460088 >seq4953 Length=3437 Score = 95.1 bits (104), Expect = 2e-14 Identities = 130/181 (72%), Gaps = 3/181 (2%) Strand=Plus/Minus Query 124996 TGTTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTT 125055 |||| || ||| ||| | || || |||||||||||||| || ||| ||||||| || | Sbjct 232 TGTTCCCGATCCAGTACCCGGAAATATGGGAAATGTACAAGAAAGCTGAGGCCTCATTCT 173 Query 125056 GGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTG 125115 |||| | ||| ||||| || || ||| ||||||| | ||||||| | | || | | Sbjct 172 GGACCGCCGAGGAGGTTGACCTCTCCGAGGACCTTTCTCATTGGGAATCCCTTTCTCCCG 113 Query 125116 AAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCG 125175 | ||| | | || || || ||||| | ||||||||||||| ||| || || |||| Sbjct 112 A---CGAGAAACACTTCATTTCCCACATCCTTGCCTTCTTTGCCGCCTCTGACGGCATCG 56 Query 125176 T 125176 | Sbjct 55 T 55 >seq54143 Length=39111 Score = 89.7 bits (98), Expect = 8e-13 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 70280 CAGTTTTACTCGTACGATGGCAAATTGTCATGCTTAATGTATCAGAGGAGTGCCGACATG 70339 ||||||||| | | |||| ||||||||||| |||||||||| | ||| |||||| Sbjct 4919 CAGTTTTACGTGGCCAATGGTGAATTGTCATGCCAAATGTATCAGCGCTCTGCTGACATG 4860 Query 70340 GGCCTCGGTGTACCCTTTAACATTGCAAGCTATTCTATGTTGACGCACATGATTGCTCA 70398 ||||| ||||| || || ||||||||| ||| || | |||| |||||||||||| Sbjct 4859 GGCCTTGGTGTGCCTTTCAACATTGCATCTTATGCTCTTCTGACATGCATGATTGCTCA 4801 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740079121418280