Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Juglans_20regia_20[refseq_20GCF_5F001411555.1_202015-10-22] 105,803 sequences; 699,672,627 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq1014 111 1e-19 seq1025 107 1e-18 seq55116 89.7 4e-13 >seq1014 Length=2264649 Score = 111 bits (122), Expect = 1e-19 Identities = 152/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || || || | |||||| || || || ||||| || || ||| | || | |||||| Sbjct 109259 ACCAAGTGCAAGGTGGACTCCTTCTGAATGTTATAGTCAGCAAGAGTCCTTCCATCTTCT 109200 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | ||| || ||||| | ||||| | || ||||| ||| ||||| || ||||| | Sbjct 109199 AGTTGCTTCCCAGCAAAAATCAACCTCTGCTGGTCTGGTGGGATTCCCTCCTTGTCCTGA 109140 Query 15275 AT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 || ||||| ||| ||| | ||||| ||||| |||| || || ||||| || ||||| Sbjct 109139 ATCTTTGC-CTTCACATTGTCTATAGTATCCGAGCTTTCAACTTCCAAGGTTATAGTTTT 109081 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 |||||||| || || |||||||||||||| Sbjct 109080 TCCTGTCAGCGTCTTCACAAAAATTTGCAT 109051 Score = 111 bits (122), Expect = 1e-19 Identities = 152/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATC-GCTTAGAATTCTCGCGTCTTC 15213 || || || || || || || ||||| || |||||||| ||| || | || | ||||| Sbjct 109487 ACCAAGTGCAGTGTCGATTCCTTTTGGATATTGTAATCTGCTAAGG-TCCTTCCATCTTC 109429 Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273 ||| || |||||||| | ||||| | || ||||| ||| || ||||||||||| Sbjct 109428 TAACTGCTTGCCAGCAAAAATCAACCTCTGCTGGTCAGGTGGGATACCTTCTTTGTCTTG 109369 Query 15274 AATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 |||||| ||| ||| | || || |||||| | | || || || || ||||||||||| Sbjct 109368 AATTTTAGCCTTCACATTATCAATAGTATCGGAACTCTCAACCTCCAAAGTAATGGTTTT 109309 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || |||| || || || ||||| ||||| Sbjct 109308 TCCAGTCAAGGTCTTAACGAAAATCTGCAT 109279 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||| | ||| | | || | ||| ||||| || || || || || |||||||| Sbjct 109733 CCACCACGCAAGCGCAGCACCAGATGTAGGGTAGATTCCTTCTGAATATTGTAATCTGCA 109674 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 ||| | ||| | ||||||| || ||||| || | || | | ||| ||||| || Sbjct 109673 AGAGTCCTCCCATCTTCTAGCTGCTTGCCTGCAAAGATAAGCCTTTGCTGGTCTGGAGGG 109614 Query 15257 ATTCCTTCTTTGTCACAAAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315 || || |||||||| || ||||| ||| ||| | || || ||||| | |||| || Sbjct 109613 ATGCCCTCTTTGTCCTGTATCTTTGC-CTTGACATTGTCGATTGTATCCGAACTTTCAAC 109555 Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || | || ||||||||||| |||| ||| || |||||||| ||||| Sbjct 109554 CTCGAGAGTTATGGTTTTACCAGTCAAAGTCTTCACAAAAATCTGCAT 109507 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 15167 GTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGTTTGCCA 15226 || || || ||||| ||||||||||| ||| | ||| | ||||| | ||||| || Sbjct 109931 GTAGACTCCTTTTGGATGTTGTAATCCGCCAGAGTCCTCCCATCTTCAAGCTGTTTCCCC 109872 Query 15227 GCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAAT-TTTGCTCTT 15285 ||| | || | | || || || || |||||||| ||||| ||| |||||| || Sbjct 109871 GCGAAGATAAGCCTCTGCTGATCCGGAGGGATTCCTTCCTTGTCCTGAATCTTTGCT-TT 109813 Query 15286 TACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTCAGAGT 15345 ||| | || || || || | | ||||| || ||||||||||| || || |||| || Sbjct 109812 CACATTATCAATCGTGTCAGAACTCTCTACCTCCAAGGTAATGGTCTTCCCAGTCAATGT 109753 Query 15346 TTTTACAAAAATTTGCAT 15363 || ||||| || ||||| Sbjct 109752 CTTCACAAATATCTGCAT 109735 >seq1025 Length=2429094 Score = 107 bits (118), Expect = 1e-18 Identities = 152/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || ||||| | |||||| || || || |||||||||||| || | || | |||||| Sbjct 1182125 ACCAAATGCAAGGTGGACTCCTTCTGAATGTTGTAATCGGCTAATGTCCTTCCATCTTCT 1182066 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 ||||| || ||||| | ||||| | || || || ||| || || || ||||| Sbjct 1182065 AATTGCTTCCCAGCAAAGATCAACCTCTGCTGATCCGGTGGGATACCCTCCTTGTCTTGG 1182006 Query 15275 AT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 || ||||| ||| ||| | ||||||||||| |||| || || ||||| || ||||| Sbjct 1182005 ATCTTTGC-CTTGACATTATCTATGGTATCCGAGCTTTCAACTTCCAAGGTTATAGTTTT 1181947 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || |||| || || ||||| ||||||||| Sbjct 1181946 TCCCGTCAAGGTCTTCACAAAGATTTGCATA 1181916 Score = 107 bits (118), Expect = 1e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 15160 ATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTG 15219 ||||||||| || || || || || |||||||| ||| | ||| ||||||| | || Sbjct 1182576 ATGAAGGGTAGACTCCTTCTGAATATTGTAATCTGCAAGAGTCCTCCCGTCTTCAAGCTG 1182517 Query 15220 TTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTT 15279 ||||| || | || | | ||| || || |||||| ||||||||||| ||| || Sbjct 1182516 CTTGCCTGCAAAGATAAGCCTTTGCTGATCTGGTGGAATACCTTCTTTGTCCTGAATCTT 1182457 Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339 ||| ||| | || || || || | | || || || || ||||||||||| || || Sbjct 1182456 CGCCTTGACATTGTCAATTGTGTCCGAACTCTCGACCTCCAATGTAATGGTTTTTCCGGT 1182397 Query 15340 CAGAGTTTTTACAAAAATTTGCAT 15363 |||||| || |||||||| ||||| Sbjct 1182396 CAGAGTCTTCACAAAAATCTGCAT 1182373 Score = 98.7 bits (108), Expect = 7e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 15167 GTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGTTTGCCA 15226 || || || ||||| || ||||||||| || | | | || ||||| || |||||| Sbjct 1182341 GTCGATTCCTTTTGAATATTGTAATCGGCTAAGGTCCGTCCATCCTCTAACTGCTTGCCA 1182282 Query 15227 GCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTGCTCTTT 15286 || | ||||| | || ||||| ||| || ||||||||||| ||| || ||| Sbjct 1182281 GCAAAAATCAACCTCTGCTGGTCTGGTGGGATACCTTCTTTGTCTTGAATCTTAGCCTTC 1182222 Query 15287 ACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTCAGAGTT 15346 ||| | || ||||||||| | || || || || ||||||||||| || |||| || Sbjct 1182221 ACATTATCAATGGTATCGGAGCTCTCAACCTCCAAAGTAATGGTTTTTCCAGTCAAGGTC 1182162 Query 15347 TTTACAAAAATTTGCAT 15363 || |||||||| ||||| Sbjct 1182161 TTGACAAAAATCTGCAT 1182145 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || || ||||||||||| || ||||| ||||| || || | | | | | ||||| Sbjct 1181669 ACCAAGTGAAGGGTGGATTCCTTTTGGATGTTATAGTCAGCCAAAGTGCGACCATCTTCA 1181610 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | ||| || |||||| | || | | ||| ||||| ||| || || |||||||| | Sbjct 1181609 AGTTGCTTACCAGCGAAGATGAGCCTTTGCTGGTCTGGTGGGATACCCTCTTTGTCCTGA 1181550 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 |||||| |||||| | || ||||| || |||| || || | ||| || || || Sbjct 1181549 ATTTTGGCTTTTACATTGTCAATGGTGTCAGAGCTTTCCACCTCAAGGGTGATTGTCTTT 1181490 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || ||||| || ||||| || ||||| Sbjct 1181489 CCAGTGAGAGTCTTGACAAAGATCTGCAT 1181461 Score = 86.0 bits (94), Expect = 5e-12 Identities = 143/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 || || ||||| || || ||||| |||||||| ||| | || | ||||| | ||| Sbjct 1182803 TGCAGAGTGGACTCCTTCTGTATATTGTAATCCGCCAGAGTCCTTCCATCTTCAAGCTGT 1182744 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAAT-TTT 15279 || || || | || | | || || || || |||||||||||||| ||| ||| Sbjct 1182743 TTACCCGCAAAGATAAGCCTCTGCTGATCTGGAGGTATTCCTTCTTTGTCCTGAATCTTT 1182684 Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339 ||| || ||| | || || ||||| | | || || || ||||||||||| || || || Sbjct 1182683 GCT-TTCACATTATCAATTGTATCAGAACTCTCGACCTCCAAGGTAATGGTCTTCCCAGT 1182625 Query 15340 CAGAGTTTTTACAAAAATTTGCAT 15363 || ||||| ||||| || ||||| Sbjct 1182624 CAATGTTTTCACAAAGATCTGCAT 1182601 >seq55116 Length=591887 Score = 89.7 bits (98), Expect = 4e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||||||||| | || ||| || || |||||||| ||||| || ||||| ||||| | Sbjct 230427 CCACCTCTCAAACGTAGAACCAAGTGGAGGGTGGATTCTTTCTGGATGTTATAATCAGCT 230486 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 ||| ||| | || || | ||| || ||||| | || | | || ||||| ||| Sbjct 230487 AGAGTTCGGCCATCCTCGAGTTGCTTTCCAGCAAAGATAAGCCTCTGCTGGTCTGGGGGA 230546 Query 15257 ATTCCTTCTTTGT-CACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315 ||||| || |||| | | ||||||| || || | || || ||||| | || || Sbjct 230547 ATTCCCTCCTTGTCCTGTATTTTTGCT-TTGACGTTATCAATAGTATCAGAGCTCTCCAC 230605 Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || | || ||||| || || || ||||| || ||||| || ||||| Sbjct 230606 CTCGAGAGTTATGGTCTTTCCAGTAAGAGTCTTGACAAAGATCTGCAT 230653 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361712179315623