Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Juglans_20regia_20[refseq_20GCF_5F001411555.1_202015-10-22] 105,803 sequences; 699,672,627 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq55116 107 2e-18 seq49365 105 6e-18 seq1025 102 7e-17 seq1014 93.3 3e-14 >seq55116 Length=591887 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 18833 ACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCC 18892 |||| ||| | ||||||||||| |||||||| ||||| |||| ||| | | ||||| Sbjct 230217 ACCAGGTGGAGTGTAGACTCCTTCTGAATATTATAATCAGCCAAAGTTCGGCCATCCTCG 230276 Query 18893 AGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCA 18952 ||||| || |||||| |||| || ||||||||||| ||| | || |||||||| | Sbjct 230277 AGCTGCTTTCCCGCAAAAATCAGCCTCTGCTGATCTGGGGGAATTCCTTCTTTGTCCTGA 230336 Query 18953 ATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTA 19012 ||||| || || | | | || ||| | ||| ||| | ||||| || || Sbjct 230337 ATTTTTGCCTTCACGTTATCAATGGTGTCGGAACTCTCAACTTCAAGAGTAATAGTCTTT 230396 Query 19013 CCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || || | |||||||||||||| ||||| Sbjct 230397 CCGGTGAGCGTTTTGACAAAAATCTGCAT 230425 >seq49365 Length=33059 Score = 105 bits (116), Expect = 6e-18 Identities = 152/212 (72%), Gaps = 2/212 (1%) Strand=Plus/Minus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||||| ||| | || ||||||||||| ||||| ||||| || | ||| | ||||||| Sbjct 27654 CACCAGGTGGAGGGTGGACTCCTTTTGGATATTATAATCGGCGAGGGTTCGGCCGTCCTC 27595 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 |||||| || || || ||||||| |||||||| ||| ||| | |||||| ||||| Sbjct 27594 CAGCTGCTTGCCGGCGAAAATAAGCCTCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTG 27535 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAG-GCTCCGTTTCGACGGTAATGGTTT 19010 || || || || | | ||| || || | || |||| || | ||| || || | Sbjct 27534 GATCTTGGCCTTCACGTTGTCGATGGTGTC-CGAGCTCTCCACCTCCAGGGTGATCGTCT 27476 Query 19011 TACCTGTTAAAGTTTTGACAAAAATTTGCATT 19042 | ||||| || || ||||| || ||||||||| Sbjct 27475 TCCCTGTCAAGGTCTTGACGAAGATTTGCATT 27444 >seq1025 Length=2429094 Score = 102 bits (112), Expect = 7e-17 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 18838 GTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTG 18897 ||||| || |||||||| || |||||||||||||||| || | | || || ||||| Sbjct 1182804 GTGCAGAGTGGACTCCTTCTGTATATTGTAATCCGCCAGAGTCCTTCCATCTTCAAGCTG 1182745 Query 18898 TTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTT 18957 |||||||||| | ||||| ||||||||||| || | || |||||||| ||| || Sbjct 1182744 TTTACCCGCAAAGATAAGCCTCTGCTGATCTGGAGGTATTCCTTCTTTGTCCTGAATCTT 1182685 Query 18958 CTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGT 19017 ||| || | | | ||||| | ||| || | ||||||||| || || || Sbjct 1182684 TGCTTTCACATTATCAATTGTATCAGAACTCTCGACCTCCAAGGTAATGGTCTTCCCAGT 1182625 Query 19018 TAAAGTTTTGACAAAAATTTGCAT 19041 || ||||| ||||| || ||||| Sbjct 1182624 CAATGTTTTCACAAAGATCTGCAT 1182601 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||||| || | ||||||||||| |||||||||||||| || | || | |||| || Sbjct 1182582 CACCAGATGAAGGGTAGACTCCTTCTGAATATTGTAATCTGCAAGAGTCCTCCCGTCTTC 1182523 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 ||||| || || ||| | ||||| || |||||||| || | || |||||||| Sbjct 1182522 AAGCTGCTTGCCTGCAAAGATAAGCCTTTGCTGATCTGGTGGAATACCTTCTTTGTCCTG 1182463 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011 ||| ||| || || | | | | || || | ||| || | ||||||||||| Sbjct 1182462 AATCTTCGCCTTGACATTGTCAATTGTGTCCGAACTCTCGACCTCCAATGTAATGGTTTT 1182403 Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || || | ||| || |||||||| ||||| Sbjct 1182402 TCCGGTCAGAGTCTTCACAAAAATCTGCAT 1182373 >seq1014 Length=2264649 Score = 93.3 bits (102), Expect = 3e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 18838 GTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTG 18897 |||||| |||||||||||||| || ||||||||||||| || | | || || ||||| Sbjct 109938 GTGCAAAGTAGACTCCTTTTGGATGTTGTAATCCGCCAGAGTCCTCCCATCTTCAAGCTG 109879 Query 18898 TTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTT 18957 ||| ||||| | ||||| |||||||||||| || | || || ||||| ||| || Sbjct 109878 TTTCCCCGCGAAGATAAGCCTCTGCTGATCCGGAGGGATTCCTTCCTTGTCCTGAATCTT 109819 Query 18958 CTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGT 19017 ||| || | | | || || | ||| || | ||||||||| || || || Sbjct 109818 TGCTTTCACATTATCAATCGTGTCAGAACTCTCTACCTCCAAGGTAATGGTCTTCCCAGT 109759 Query 19018 TAAAGTTTTGACAAAAATTTGCAT 19041 || || || ||||| || ||||| Sbjct 109758 CAATGTCTTCACAAATATCTGCAT 109735 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 || || ||||| | | ||||| || | ||||| ||||| |||||||||||||| || Sbjct 109733 CCACCACGCAAGCGCAGCACCAGATGTAGGGTAGATTCCTTCTGAATATTGTAATCTGCA 109674 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | || | | || || ||||| || || ||| | ||||| || ||||| || || Sbjct 109673 AGAGTCCTCCCATCTTCTAGCTGCTTGCCTGCAAAGATAAGCCTTTGCTGGTCTGGAGGG 109614 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTT 18994 | |||||||||||| || || || || | | ||| ||||| | || Sbjct 109613 ATGCCCTCTTTGTCCTGTATCTTTGCCTTGACATTGTCGATTGTATCCGAACTTTCAACC 109554 Query 18995 TCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCATT 19042 |||| || ||||||||||| || ||||| || |||||||| |||||| Sbjct 109553 TCGAGAGTTATGGTTTTACCAGTCAAAGTCTTCACAAAAATCTGCATT 109506 Score = 86.0 bits (94), Expect = 5e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 18813 TTCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCG 18872 |||| || ||||| | | ||||| ||||| || || |||||||| ||||||||||| | Sbjct 109507 TTCCGCCACGCAAACGCAGCACCAAGTGCAGTGTCGATTCCTTTTGGATATTGTAATCTG 109448 Query 18873 CCATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGG 18932 | | || | | || || | ||| || || ||| |||| | |||||||| || | Sbjct 109447 CTAAGGTCCTTCCATCTTCTAACTGCTTGCCAGCAAAAATCAACCTCTGCTGGTCAGGTG 109388 Query 18933 GCACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCG 18992 | | || |||||||| |||||| || || | | | ||||||| | ||| Sbjct 109387 GGATACCTTCTTTGTCTTGAATTTTAGCCTTCACATTATCAATAGTATCGGAACTCTCAA 109328 Query 18993 TTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCATT 19042 || | ||||||||||| || || || || || || ||||| |||||| Sbjct 109327 CCTCCAAAGTAATGGTTTTTCCAGTCAAGGTCTTAACGAAAATCTGCATT 109278 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414038219127382