Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Juglans_20regia_20[refseq_20GCF_5F001411555.1_202015-10-22] 105,803 sequences; 699,672,627 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq55116 93.3 3e-14 seq1025 93.3 3e-14 >seq55116 Length=591887 Score = 93.3 bits (102), Expect = 3e-14 Identities = 151/214 (71%), Gaps = 10/214 (5%) Strand=Plus/Plus Query 33161 ACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG--TCAT 33218 |||||||| | || |||||||| || || |||||||||| ||| || || || | Sbjct 229761 ACCAAATGAAGAGTAGACTCTTTCTGGATGTTGTAATCAGCCAA--TGTCCTGCCATCCT 229818 Query 33219 CCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGC 33278 | | |||||||||| |||||| || | |||||||| | || |||||||| || || Sbjct 229819 CAAGTTGCTTTCCAGCAAATATCAACCTCTGCTGGTCGGGAGGAATGCCTTCCTTATCCT 229878 Query 33279 TAAT---CGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCG 33335 ||| ||||| | || | | ||| || || | | ||| ||||||||||| | Sbjct 229879 GAATTTTCGCCT---TCACATTGTCAATTGTATCAGAGCTCTCAACCTCCAGAGTTATAG 229935 Query 33336 TTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 | ||||| ||||| || || || || |||||||| Sbjct 229936 TCTTTCCAGTAAGGGTCTTGACAAAGATTTGCAT 229969 >seq1025 Length=2429094 Score = 93.3 bits (102), Expect = 3e-14 Identities = 166/240 (69%), Gaps = 8/240 (3%) Strand=Plus/Minus Query 33135 AATCTTCA--CCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATT 33192 ||||| || || |||| || |||| |||||| ||||| ||||| || ||||| ||||| Sbjct 1182381 AATCTGCATCCCTCCTCGCAAACGCAGCACCAAGTGCAAAGTCGATTCCTTTTGAATATT 1182322 Query 33193 GTAATCAGACAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTG 33252 |||||| | || | || || || || ||||| ||| ||| || || | ||||| Sbjct 1182321 GTAATCGGCTAAGGTCCGTCCATCCTCTAACTGCTTGCCAGCAAAAATCAACCTCTGCTG 1182262 Query 33253 GTCCGTGGGTATGCCTTCTTTTTCGCTAATC---GCCTGTTTTACTGTTTGAATCGTGTC 33309 ||| | || || |||||||| || |||| ||| || || | | ||| || || Sbjct 1182261 GTCTGGTGGGATACCTTCTTTGTCTTGAATCTTAGCC---TTCACATTATCAATGGTATC 1182205 Query 33310 GTTGGGTTGAACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 | | | ||| |||| ||| || |||||||| || | || || || ||||| ||||| Sbjct 1182204 GGAGCTCTCAACCTCCAAAGTAATGGTTTTTCCAGTCAAGGTCTTGACAAAAATCTGCAT 1182145 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318366544553094