Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Juglans_20regia_20[refseq_20GCF_5F001411555.1_202015-10-22] 105,803 sequences; 699,672,627 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq1025 98.7 7e-16 >seq1025 Length=2429094 Score = 98.7 bits (108), Expect = 7e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954 ||||||| ||| | | |||||| || | || || ||||||||||| |||||| | Sbjct 1182371 CCTCCTCGCAAACGCAGCACCAAGTGCAAAGTCGATTCCTTTTGAATATTGTAATCGGCT 1182312 Query 43955 AATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGT 44014 || || |||| || || || || || ||||| ||||||| |||||||| | || Sbjct 1182311 AAGGTCCGTCCATCCTCTAACTGCTTGCCAGCAAAAATCAACCTCTGCTGGTCTGGTGGG 1182252 Query 44015 ACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACA 44074 | ||||||||| ||| ||| || || || || ||| ||||| | ||| || Sbjct 1182251 ATACCTTCTTTGTCTTGAATCTTAGCCTTCACATTATCAATGGTATCGGAGCTCTCAACC 1182192 Query 44075 TCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | ||||| ||||| || || || ||||| ||||| || ||||| Sbjct 1182191 TCCAAAGTAATGGTTTTTCCAGTCAAGGTCTTGACAAAAATCTGCAT 1182145 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 43912 CACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTC 43971 ||||||||| | ||| ||| || ||||| || |||||| |||| | |||| || Sbjct 1182126 CACCAAATGCAAGGTGGACTCCTTCTGAATGTTGTAATCGGCTAATGTCCTTCCATCTTC 1182067 Query 43972 CAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGA 44031 ||||| || || ||||| ||||||| ||||| ||| | || | ||| || || ||| Sbjct 1182066 TAATTGCTTCCCAGCAAAGATCAACCTCTGCTGATCCGGTGGGATACCCTCCTTGTCTTG 1182007 Query 44032 AATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTT 44091 || ||| ||||| || | | ||||| | || || || | || || ||||| Sbjct 1182006 GATCTTTGCCTTGACATTATCTATGGTATCCGAGCTTTCAACTTCCAAGGTTATAGTTTT 1181947 Query 44092 ACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || || || ||||||||||| |||||||| Sbjct 1181946 TCCCGTCAAGGTCTTCACAAAGATTTGCAT 1181917 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354320123486844