Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Juglans_20regia_20[refseq_20GCF_5F001411555.1_202015-10-22] 105,803 sequences; 699,672,627 total letters Query= NC_005137.2 Length=131160 Score E Sequences producing significant alignments: (Bits) Value seq1014 104 2e-17 seq1025 96.9 3e-15 seq55116 93.3 4e-14 >seq1014 Length=2264649 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 19980 TTCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGC 20039 |||| || || || | || |||||| || ||||| ||||| ||||| || |||||||| Sbjct 109507 TTCCGCCACGCAAACGCAGCACCAAGTGCAGTGTCGATTCCTTTTGGATATTGTAATCTG 109448 Query 20040 CCATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGG 20099 | | || | |||||| || || ||||| ||| |||| | |||||| || || | Sbjct 109447 CTAAGGTCCTTCCATCTTCTAACTGCTTGCCAGCAAAAATCAACCTCTGCTGGTCAGGTG 109388 Query 20100 GCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCG 20159 | | ||||||||||| |||||| ||||| | ||| || |||| | || Sbjct 109387 GGATACCTTCTTTGTCTTGAATTTTAGCCTTCACATTATCAATAGTATCGGAACTCTCAA 109328 Query 20160 TTTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCATT 20209 |||| ||||||||||| || ||||| || || || ||||| |||||| Sbjct 109327 CCTCCAAAGTAATGGTTTTTCCAGTCAAGGTCTTAACGAAAATCTGCATT 109278 >seq1025 Length=2429094 Score = 96.9 bits (106), Expect = 3e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 20006 TGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCCAATTGT 20065 || || || || || || ||||| |||||||| ||| ||| | |||||| | ||| Sbjct 1182803 TGCAGAGTGGACTCCTTCTGTATATTGTAATCCGCCAGAGTCCTTCCATCTTCAAGCTGT 1182744 Query 20066 TTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCAATTTTT 20125 || |||||| | ||||||||||| ||||| || | ||||||||||| ||| ||| Sbjct 1182743 TTACCCGCAAAGATAAGCCTCTGCTGATCTGGAGGTATTCCTTCTTTGTCCTGAATCTTT 1182684 Query 20126 TGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTTGCCGGTC 20185 |||||| | ||| | ||| | || |||| ||||||||| || || ||| Sbjct 1182683 GCTTTCACATTATCAATTGTATCAGAACTCTCGACCTCCAAGGTAATGGTCTTCCCAGTC 1182624 Query 20186 AACGTTTTGACAAAAATTTGCAT 20208 || ||||| ||||| || ||||| Sbjct 1182623 AATGTTTTCACAAAGATCTGCAT 1182601 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041 |||||||| || | || |||||| || | || ||||| ||||| || ||||||||| | Sbjct 1182371 CCTCCTCGCAAACGCAGCACCAAGTGCAAAGTCGATTCCTTTTGAATATTGTAATCGGCT 1182312 Query 20042 ATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGC 20101 | || ||| || || || ||||| ||| |||| | |||||| || || || Sbjct 1182311 AAGGTCCGTCCATCCTCTAACTGCTTGCCAGCAAAAATCAACCTCTGCTGGTCTGGTGGG 1182252 Query 20102 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGT-TCCGT 20160 | ||||||||||| ||| || ||||| | ||| | |||| || | || Sbjct 1182251 ATACCTTCTTTGTCTTGAATCTTAGCCTTCACATTATCAATGGTATCG-GAGCTCTCAAC 1182193 Query 20161 TTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCATT 20209 |||| ||||||||||| || ||||| || ||||||||||| |||||| Sbjct 1182192 CTCCAAAGTAATGGTTTTTCCAGTCAAGGTCTTGACAAAAATCTGCATT 1182144 >seq55116 Length=591887 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 20000 ACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCC 20059 |||| || |||||||| || || || || || ||||| ||| |||| ||| || Sbjct 230217 ACCAGGTGGAGTGTAGACTCCTTCTGAATATTATAATCAGCCAAAGTTCGGCCATCCTCG 230276 Query 20060 AATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCA 20119 | || || |||||| |||| |||||||| ||||| ||| | ||||||||||| | Sbjct 230277 AGCTGCTTTCCCGCAAAAATCAGCCTCTGCTGATCTGGGGGAATTCCTTCTTTGTCCTGA 230336 Query 20120 ATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTTG 20179 |||||| ||||| | ||| | ||| | || ||| | ||||| || || Sbjct 230337 ATTTTTGCCTTCACGTTATCAATGGTGTCGGAACTCTCAACTTCAAGAGTAATAGTCTTT 230396 Query 20180 CCGGTCAACGTTTTGACAAAAATTTGCAT 20208 ||||| | ||||||||||||||| ||||| Sbjct 230397 CCGGTGAGCGTTTTGACAAAAATCTGCAT 230425 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419046153188643