Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Juglans_20regia_20[refseq_20GCF_5F001411555.1_202015-10-22] 105,803 sequences; 699,672,627 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq45900 104 2e-17 seq1868 104 2e-17 seq1025 96.9 3e-15 seq55116 89.7 4e-13 seq54652 87.8 2e-12 seq1533 82.4 6e-11 >seq45900 Length=1264 Score = 104 bits (114), Expect = 2e-17 Identities = 148/206 (72%), Gaps = 2/206 (1%) Strand=Plus/Minus Query 48523 ATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTCCAGCT 48581 ||| || ||| |||||| || || ||||| || || || || || ||||||||| || Sbjct 728 ATGGAGCGTGGACTCCTTCTGGATATTGTAGTCGGC-AAGGGTGCGACCGTCCTCCAACT 670 Query 48582 GCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTT 48641 |||| ||| || | || ||||||||||||||| || | || |||||||||| || | Sbjct 669 GCTTCCCGGCGAAGATCAAACGCTGCTGATCCGGAGGGATACCTTCCTTGTCCTGGATCT 610 Query 48642 TCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGG 48701 | ||| | | ||||| |||| | ||| ||||| || ||||| || |||| Sbjct 609 TGGCCTTAACGTTATCGATGGTGTCGGAACTCTCGACCTCGAGGGTGATGGTCTTCCCGG 550 Query 48702 TGAGAGTTTTCACAAAAATCTGCATC 48727 |||| ||||| || || ||||||||| Sbjct 549 TGAGGGTTTTGACGAAGATCTGCATC 524 Score = 104 bits (114), Expect = 2e-17 Identities = 148/206 (72%), Gaps = 2/206 (1%) Strand=Plus/Minus Query 48523 ATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTCCAGCT 48581 ||| || ||| |||||| || || ||||| || || || || || ||||||||| || Sbjct 956 ATGGAGCGTGGACTCCTTCTGGATATTGTAGTCGGC-AAGGGTGCGACCGTCCTCCAACT 898 Query 48582 GCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTT 48641 |||| ||| || | || ||||||||||||||| || | || |||||||||| || | Sbjct 897 GCTTCCCGGCGAAGATCAAACGCTGCTGATCCGGAGGGATACCTTCCTTGTCCTGGATCT 838 Query 48642 TCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGG 48701 | ||| | | ||||| |||| | ||| ||||| || ||||| || |||| Sbjct 837 TGGCCTTAACGTTATCGATGGTGTCGGAACTCTCGACCTCGAGGGTGATGGTCTTCCCGG 778 Query 48702 TGAGAGTTTTCACAAAAATCTGCATC 48727 |||| ||||| || || ||||||||| Sbjct 777 TGAGGGTTTTGACGAAGATCTGCATC 752 Score = 104 bits (114), Expect = 2e-17 Identities = 148/206 (72%), Gaps = 2/206 (1%) Strand=Plus/Minus Query 48523 ATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTCCAGCT 48581 ||| || ||| |||||| || || ||||| || || || || || ||||||||| || Sbjct 1184 ATGGAGCGTGGACTCCTTCTGGATATTGTAGTCGGC-AAGGGTGCGACCGTCCTCCAACT 1126 Query 48582 GCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTT 48641 |||| ||| || | || ||||||||||||||| || | || |||||||||| || | Sbjct 1125 GCTTCCCGGCGAAGATCAAACGCTGCTGATCCGGAGGGATACCTTCCTTGTCCTGGATCT 1066 Query 48642 TCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGG 48701 | ||| | | ||||| |||| | ||| ||||| || ||||| || |||| Sbjct 1065 TGGCCTTAACGTTATCGATGGTGTCGGAACTCTCGACCTCGAGGGTGATGGTCTTCCCGG 1006 Query 48702 TGAGAGTTTTCACAAAAATCTGCATC 48727 |||| ||||| || || ||||||||| Sbjct 1005 TGAGGGTTTTGACGAAGATCTGCATC 980 Score = 102 bits (112), Expect = 7e-17 Identities = 147/205 (72%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 48523 ATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTCCAGCT 48581 ||| || ||| |||||| ||||| ||||| || || || || || ||||||||| || Sbjct 500 ATGGAGCGTGGACTCCTTCTGAATATTGTAGTCGGC-AAGGGTGCGACCGTCCTCCAACT 442 Query 48582 GCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTT 48641 |||| ||| || | || ||||||||||||||| || | || |||||||||| || | Sbjct 441 GCTTCCCGGCGAAGATCAAACGCTGCTGATCCGGAGGAATACCTTCCTTGTCCTGGATCT 382 Query 48642 TCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGG 48701 | ||| | | ||||| |||| ||| ||||| || ||||| || |||| Sbjct 381 TGGCCTTAACGTTGTCAATGGTGTCGGAGCTCTCGACCTCGAGAGTGATGGTCTTGCCGG 322 Query 48702 TGAGAGTTTTCACAAAAATCTGCAT 48726 |||| ||||| || || |||||||| Sbjct 321 TGAGGGTTTTGACGAAGATCTGCAT 297 >seq1868 Length=298818 Score = 104 bits (114), Expect = 2e-17 Identities = 148/206 (72%), Gaps = 2/206 (1%) Strand=Plus/Minus Query 48523 ATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTCCAGCT 48581 ||| || ||| |||||| || || ||||| || || || || || ||||||||| || Sbjct 223446 ATGGAGCGTGGACTCCTTCTGGATATTGTAGTCGGC-AAGGGTGCGACCGTCCTCCAACT 223388 Query 48582 GCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTT 48641 |||| ||| || | || ||||||||||||||| || | || |||||||||| || | Sbjct 223387 GCTTCCCGGCGAAGATCAAACGCTGCTGATCCGGAGGGATACCTTCCTTGTCCTGGATCT 223328 Query 48642 TCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGG 48701 | ||| | | ||||| |||| | ||| ||||| || ||||| || |||| Sbjct 223327 TGGCCTTAACGTTATCGATGGTGTCGGAACTCTCGACCTCGAGGGTGATGGTCTTCCCGG 223268 Query 48702 TGAGAGTTTTCACAAAAATCTGCATC 48727 |||| ||||| || || ||||||||| Sbjct 223267 TGAGGGTTTTGACGAAGATCTGCATC 223242 Score = 104 bits (114), Expect = 2e-17 Identities = 148/206 (72%), Gaps = 2/206 (1%) Strand=Plus/Minus Query 48523 ATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTCCAGCT 48581 ||| || ||| |||||| || || ||||| || || || || || ||||||||| || Sbjct 223674 ATGGAGCGTGGACTCCTTCTGGATATTGTAGTCGGC-AAGGGTGCGACCGTCCTCCAACT 223616 Query 48582 GCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTT 48641 |||| ||| || | || ||||||||||||||| || | || |||||||||| || | Sbjct 223615 GCTTCCCGGCGAAGATCAAACGCTGCTGATCCGGAGGGATACCTTCCTTGTCCTGGATCT 223556 Query 48642 TCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGG 48701 | ||| | | ||||| |||| | ||| ||||| || ||||| || |||| Sbjct 223555 TGGCCTTAACGTTATCGATGGTGTCGGAACTCTCGACCTCGAGGGTGATGGTCTTCCCGG 223496 Query 48702 TGAGAGTTTTCACAAAAATCTGCATC 48727 |||| ||||| || || ||||||||| Sbjct 223495 TGAGGGTTTTGACGAAGATCTGCATC 223470 Score = 104 bits (114), Expect = 2e-17 Identities = 146/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 48523 ATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTG 48582 |||||| ||| |||||| || || ||||| || || | || ||||||||| ||| Sbjct 223902 ATGAAGCGTGGACTCCTTCTGGATATTGTAGTCGGCGAGGGTGCGACCGTCCTCCAACTG 223843 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 ||| || || | || |||||||||||||| || | || |||||||||| || || Sbjct 223842 CTTCCCAGCGAAGATCAAACGCTGCTGATCGGGAGGGATACCTTCCTTGTCCTGGATCTT 223783 Query 48643 CTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGT 48702 ||||| ||||||| |||| | ||| ||||| || ||||| || ||||| Sbjct 223782 GGCCTTGACGTTGTCTATGGTGTCGGAACTCTCGACCTCGAGGGTGATGGTCTTCCCGGT 223723 Query 48703 GAGAGTTTTCACAAAAATCTGCATC 48727 ||| ||||| || || ||||||||| Sbjct 223722 GAGGGTTTTGACGAAGATCTGCATC 223698 Score = 98.7 bits (108), Expect = 8e-16 Identities = 163/231 (71%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559 || ||||| | | || || | ||| || ||| |||||| |||||||| || || || Sbjct 224153 CCACCGCGGAGACGTAGGACGAGATGGAGGGTGGACTCCTTCTGAATGTTATAGTCGGC- 224095 Query 48560 AATTGT-CGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 || || || | ||||||| ||||| ||| || | || | |||||||||||| || Sbjct 224094 AAGGGTGCGACCATCCTCCAATTGCTTGCCGGCGAAGATCAGACGCTGCTGATCGGGAGG 224035 Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGA--TAGACGCTATGGTATCGGTAGACTCC 48676 | || |||||||||| || || ||||| | | || ||||| |||| | ||| Sbjct 224034 GATACCTTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCG--ATGGTGTCGGAACTCTCG 223977 Query 48677 GTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATC 48727 ||||| || ||||| || |||||||| ||||| || || ||||||||| Sbjct 223976 ACCTCGAGGGTGATGGTCTTCCCGGTGAGGGTTTTGACGAAGATCTGCATC 223926 >seq1025 Length=2429094 Score = 96.9 bits (106), Expect = 3e-15 Identities = 150/212 (71%), Gaps = 2/212 (1%) Strand=Plus/Minus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCG-CTCGTCCT 48575 ||| | |||||| || |||||| ||||| |||||||| || || ||| | |||| | Sbjct 1182582 CACCAGATGAAGGGTAGACTCCTTCTGAATATTGTAATCTGC-AAGAGTCCTCCCGTCTT 1182524 Query 48576 CCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCA 48635 | |||||||| || | | || | | |||||||| || | || ||| |||||| Sbjct 1182523 CAAGCTGCTTGCCTGCAAAGATAAGCCTTTGCTGATCTGGTGGAATACCTTCTTTGTCCT 1182464 Query 48636 TAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTT 48695 ||| ||| ||||| | | || || || | | ||| ||| | ||| ||||||| Sbjct 1182463 GAATCTTCGCCTTGACATTGTCAATTGTGTCCGAACTCTCGACCTCCAATGTAATGGTTT 1182404 Query 48696 TACCGGTGAGAGTTTTCACAAAAATCTGCATC 48727 | ||||| ||||| |||||||||||||||||| Sbjct 1182403 TTCCGGTCAGAGTCTTCACAAAAATCTGCATC 1182372 >seq55116 Length=591887 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583 || ||||| |||||| ||||| || ||||||||||| ||| | ||||| |||||| Sbjct 230223 TGGAGTGTAGACTCCTTCTGAATATTATAATCAGCCAAAGTTCGGCCATCCTCGAGCTGC 230282 Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643 || || | |||| | | ||||||||| || | | ||| |||||| |||||| Sbjct 230283 TTTCCCGCAAAAATCAGCCTCTGCTGATCTGGGGGAATTCCTTCTTTGTCCTGAATTTTT 230342 Query 48644 TGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTG 48703 ||| | | ||||| |||| | ||| || | || || || || |||||| Sbjct 230343 GCCTTCACGTTATCAATGGTGTCGGAACTCTCAACTTCAAGAGTAATAGTCTTTCCGGTG 230402 Query 48704 AGAGTTTTCACAAAAATCTGCATC 48727 || ||||| ||||||||||||||| Sbjct 230403 AGCGTTTTGACAAAAATCTGCATC 230426 >seq54652 Length=76240 Score = 87.8 bits (96), Expect = 2e-12 Identities = 143/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583 || || ||| |||||| || || ||||||||||| || ||| | ||||| ||||| Sbjct 48122 TGGAGAGTGGACTCCTTCTGGATATTGTAATCAGCTAAGGTTCGGCCATCCTCGAGCTGT 48063 Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643 || || || | || | |||||||| ||| ||| | || |||||||| || || Sbjct 48062 TTCCCAGCGAAGATGAGCCGCTGCTGGTCCGGCGGGATACCCTCCTTGTCTTGGATCTTG 48003 Query 48644 TGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTG 48703 ||| | | | ||||| || | ||||| ||||| |||||||| || || || Sbjct 48002 GCCTTAACATTGTCGATGGTGTCCGAGGACTCAACCTCGAGGGTTATGGTCTTCCCCGTT 47943 Query 48704 AGAGTTTTCACAAAAATCTGCATCGT 48729 || |||||||| || |||||||| || Sbjct 47942 AGGGTTTTCACGAAGATCTGCATGGT 47917 >seq1533 Length=248107 Score = 82.4 bits (90), Expect = 6e-11 Identities = 135/195 (69%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 |||||| || |||||||| || || || ||| | ||||| ||||| || || || | Sbjct 240000 CTCCTTCTGTATGTTGTAGTCGGCTAAAGTTCGGCCATCCTCGAGCTGTTTCCCAGCGAA 239941 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGA 48654 || | |||||||||||| ||| | | ||||| || || || ||||| | Sbjct 239940 GATGAGGCGCTGCTGATCCGGCGGGATGCCCTCCTTATCTTGGATCTTGGCCTTGACATT 239881 Query 48655 CGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCAC 48714 | |||||||| | ||||| ||| | |||||||| || || || || |||||||| Sbjct 239880 GTCGATGGTATCCGAGGACTCGACCTCTAGGGTTATGGTCTTCCCCGTTAGGGTTTTCAC 239821 Query 48715 AAAAATCTGCATCGT 48729 || |||||||| || Sbjct 239820 GAAGATCTGCATGGT 239806 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420708007503803