Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Juglans_20regia_20[refseq_20GCF_5F001411555.1_202015-10-22] 105,803 sequences; 699,672,627 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq64069 122 5e-23 seq53824 122 5e-23 seq1761 116 2e-21 seq55690 109 3e-19 seq1474 109 3e-19 seq53497 107 1e-18 seq55136 105 3e-18 seq54472 105 3e-18 seq49726 105 3e-18 seq55753 104 1e-17 seq55733 104 1e-17 seq12142 104 1e-17 seq1372 104 1e-17 seq988 104 1e-17 seq55116 102 4e-17 seq55382 100 1e-16 seq53658 89.7 3e-13 >seq64069 Length=925 Score = 122 bits (134), Expect = 5e-23 Identities = 90/105 (86%), Gaps = 2/105 (2%) Strand=Plus/Plus Query 11425 AGGGAAATATAGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACC 11484 ||| ||| |||||| |||| |||| | ||||||||||| | | |||||||| ||||| Sbjct 767 AGGAAAAAATAGAA--AATAGAAAACAACATTGGCCCATGCAGGTCTCGAACCTGCGACC 824 Query 11485 TTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||||||||||||||| ||||||||||||||| |||| Sbjct 825 TTCGCGTTATTAGCACGACGCTCTAACCAACTGAGCTAATAGGCC 869 >seq53824 Length=58295 Score = 122 bits (134), Expect = 5e-23 Identities = 90/105 (86%), Gaps = 2/105 (2%) Strand=Plus/Plus Query 11425 AGGGAAATATAGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACC 11484 ||| ||| |||||| |||| |||| | ||||||||||| | | |||||||| ||||| Sbjct 21584 AGGAAAAAATAGAA--AATAGAAAACGACATTGGCCCATGCAGGTCTCGAACCTGCGACC 21641 Query 11485 TTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||||||||||||||| ||||||||||||||| |||| Sbjct 21642 TTCGCGTTATTAGCACGACGCTCTAACCAACTGAGCTAATAGGCC 21686 Score = 122 bits (134), Expect = 5e-23 Identities = 90/105 (86%), Gaps = 2/105 (2%) Strand=Plus/Plus Query 11425 AGGGAAATATAGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACC 11484 ||| ||| |||||| |||| |||| | ||||||||||| | | |||||||| ||||| Sbjct 22416 AGGAAAAAATAGAA--AATAGAAAACAACATTGGCCCATGCAGGTCTCGAACCTGCGACC 22473 Query 11485 TTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||||||||||||||| ||||||||||||||| |||| Sbjct 22474 TTCGCGTTATTAGCACGACGCTCTAACCAACTGAGCTAATAGGCC 22518 >seq1761 Length=289715 Score = 116 bits (128), Expect = 2e-21 Identities = 85/98 (87%), Gaps = 1/98 (1%) Strand=Plus/Minus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 ||||||||| | ||||||||||| | | |||||||| ||||||||||||||||||||| Sbjct 254035 AATAAAAAAGAACATTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCAC 253976 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC-GTCGACGA 11537 |||||||| |||| |||||||||| |||| || ||||| Sbjct 253975 GACGCTCTAACCAGCTGAGCTAATAGGCCAGTTGACGA 253938 >seq55690 Length=1041348 Score = 109 bits (120), Expect = 3e-19 Identities = 76/86 (88%), Gaps = 1/86 (1%) Strand=Plus/Minus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 ||||||| |||| |||||||| | | |||||||| |||||||||||||||||||||||| Sbjct 239326 AAAAAATAAAAT-GGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGAC 239268 Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529 ||||| |||| |||||||||| |||| Sbjct 239267 GCTCTAACCAGCTGAGCTAATAGGCC 239242 >seq1474 Length=184977 Score = 109 bits (120), Expect = 3e-19 Identities = 79/91 (87%), Gaps = 2/91 (2%) Strand=Plus/Minus Query 11441 AATAAAAAATCAAAT--TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGC 11498 || |||||| |||| ||||||||| | | |||||||| ||||||||||||||||||| Sbjct 157659 AAAAAAAAAACAAAAAGTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGC 157600 Query 11499 ACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||| ||||||||||||||| |||| Sbjct 157599 ACGACGCTCTAACCAACTGAGCTAATAGGCC 157569 >seq53497 Length=37656 Score = 107 bits (118), Expect = 1e-18 Identities = 70/78 (90%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||| ||||||||| | | |||||||| ||||||||||||||||||||||||||||| || Sbjct 13498 AAAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 13557 Query 11512 CAACTGAGCTAATGGGCC 11529 ||||||||||||| |||| Sbjct 13558 CAACTGAGCTAATAGGCC 13575 >seq55136 Length=3087137 Score = 105 bits (116), Expect = 3e-18 Identities = 68/75 (91%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 941248 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 941307 Query 11516 TGAGCTAATGGGCCG 11530 ||||||||| ||||| Sbjct 941308 TGAGCTAATAGGCCG 941322 >seq54472 Length=50098 Score = 105 bits (116), Expect = 3e-18 Identities = 77/90 (86%), Gaps = 4/90 (4%) Strand=Plus/Plus Query 11444 AAAAAATCAAATT----GGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCA 11499 ||||||| | ||| |||||||| | | |||||||| |||||||||||||||||||| Sbjct 29579 AAAAAATAACATTACCTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCA 29638 Query 11500 CGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||| ||||||||||||||| |||| Sbjct 29639 CGACGCTCTAACCAACTGAGCTAATAGGCC 29668 >seq49726 Length=10180 Score = 105 bits (116), Expect = 3e-18 Identities = 78/92 (85%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 11454 ATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCA 11513 ||||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||| Sbjct 7823 ATTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCA 7764 Query 11514 ACTGAGCTAATGGGCCGTCGACGATTGTGATT 11545 |||||||||| |||| || | | ||| ||| Sbjct 7763 GCTGAGCTAATAGGCCATCTGCTAGTGTTATT 7732 >seq55753 Length=516095 Score = 104 bits (114), Expect = 1e-17 Identities = 67/74 (91%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 85200 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 85259 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 85260 TGAGCTAATAGGCC 85273 Score = 104 bits (114), Expect = 1e-17 Identities = 67/74 (91%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 466446 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 466505 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 466506 TGAGCTAATAGGCC 466519 >seq55733 Length=1641379 Score = 104 bits (114), Expect = 1e-17 Identities = 67/74 (91%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 697840 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 697781 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 697780 TGAGCTAATAGGCC 697767 >seq12142 Length=2186 Score = 104 bits (114), Expect = 1e-17 Identities = 67/74 (91%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 1048 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 1107 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 1108 TGAGCTAATAGGCC 1121 >seq1372 Length=1635059 Score = 104 bits (114), Expect = 1e-17 Identities = 67/74 (91%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 912825 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 912766 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 912765 TGAGCTAATAGGCC 912752 >seq988 Length=2213010 Score = 104 bits (114), Expect = 1e-17 Identities = 67/74 (91%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 904869 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 904810 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 904809 TGAGCTAATAGGCC 904796 >seq55116 Length=591887 Score = 102 bits (112), Expect = 4e-17 Identities = 69/78 (88%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||| ||||||||| | | |||||||| ||||||||||||||||||||||||||||| || Sbjct 348708 AAAGTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 348649 Query 11512 CAACTGAGCTAATGGGCC 11529 || |||||||||| |||| Sbjct 348648 CAGCTGAGCTAATAGGCC 348631 Score = 100 bits (110), Expect = 1e-16 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||| | Sbjct 440678 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAGC 440619 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 440618 TGAGCTAATAGGCC 440605 >seq55382 Length=760816 Score = 100 bits (110), Expect = 1e-16 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 711481 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 711422 Query 11516 TGAGCTAATGGGCC 11529 |||||||| |||| Sbjct 711421 TGAGCTAACAGGCC 711408 >seq53658 Length=44898 Score = 89.7 bits (98), Expect = 3e-13 Identities = 75/92 (82%), Gaps = 3/92 (3%) Strand=Plus/Plus Query 11454 ATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCA 11513 ||||||||||| | | |||||||| ||||||||||||||||||| ||||||| |||| Sbjct 36541 ATTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGC---ACGCTCTAACCA 36597 Query 11514 ACTGAGCTAATGGGCCGTCGACGATTGTGATT 11545 |||||||||| |||| || | | ||| ||| Sbjct 36598 GCTGAGCTAATAGGCCATCTGCTAGTGTTATT 36629 Lambda K H 0.638 0.409 0.919 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261154013880028