Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Juglans_20regia_20[refseq_20GCF_5F001411555.1_202015-10-22] 105,803 sequences; 699,672,627 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq50445 145 1e-30 seq1512 145 1e-30 seq1147 127 3e-25 seq55754 125 1e-24 seq55434 116 6e-22 seq49938 116 6e-22 seq55670 114 2e-21 seq1488 87.8 3e-13 >seq50445 Length=6593 Score = 145 bits (160), Expect = 1e-30 Identities = 160/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519 || |||||||| || ||||||||||| ||||| || || || || | |||||||||||| Sbjct 3482 GACAACATCCAGGGCATCACCAAGCCCGCTATACGACGACTCGCGAGGCGTGGTGGAGTC 3541 Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579 ||||| || || | |||| || |||| ||||| ||| | |||||||||||| || Sbjct 3542 AAGCGCATCAGCGGCCTCATCTACGAGGAGACTCGTGGCGTTCTCAAGATCTTCCTCGAG 3601 Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639 | ||| |||| || || | ||| || ||||| ||| || |||||||| ||| || Sbjct 3602 AACGTGATCCGCGACGCCGTTACCTACACAGAGCATGCTCGCCGCAAGACTGTAACCGCC 3661 Query 16640 ATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| |||||||||| ||||| || || ||| Sbjct 3662 ATGGACGTCGTCTATGCCTTGAAGCGGCAGGGC 3694 >seq1512 Length=943511 Score = 145 bits (160), Expect = 1e-30 Identities = 160/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519 || |||||||| || ||||||||||| ||||| || || || || | |||||||||||| Sbjct 139363 GACAACATCCAGGGCATCACCAAGCCCGCTATACGACGACTCGCGAGGCGTGGTGGAGTC 139422 Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579 ||||| || || | |||| || |||| ||||| ||| | |||||||||||| || Sbjct 139423 AAGCGCATCAGCGGCCTCATCTACGAGGAGACTCGTGGCGTTCTCAAGATCTTCCTCGAG 139482 Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639 | ||| |||| || || | ||| || ||||| ||| || |||||||| ||| || Sbjct 139483 AACGTGATCCGCGACGCCGTTACCTACACAGAGCATGCTCGCCGCAAGACTGTAACCGCC 139542 Query 16640 ATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| |||||||||| ||||| || || ||| Sbjct 139543 ATGGACGTCGTCTATGCCTTGAAGCGGCAGGGC 139575 >seq1147 Length=783269 Score = 127 bits (140), Expect = 3e-25 Identities = 190/267 (71%), Gaps = 2/267 (1%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || |||||||| || | | || || || || ||||||||||| ||||||||||| || || Sbjct 145687 GCAAAGCGTCACCGTAAGGTC-CTCCGGGACAACATCCAAGGCATCACCAAGCCTGCGAT 145629 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 || ||| | |||||| | ||||| || |||||| || ||| || |||| || |||| Sbjct 145628 ACGCCGTTTAGCTCGTAGGGGTGGTGTGAAGCGTATCAGCGGACTGATCTACGAGGAGAC 145569 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 | | | ||| | ||||||||| | ||| ||| || | |||||| | || ||||| Sbjct 145568 TAGAGGTGTCCTCAAGATCTTCTTGGAGAACGTCATTCGTGATGCCGTGACATACACCGA 145509 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| | | |||||||| || ||||||| | || || || ||||| | || || Sbjct 145508 GCACGCAAGGAGAAAGACTGTGACAGCCATGGACGTGGTTTACGCTTTGAAGAGGCAGGG 145449 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTA 16698 | | | ||||| ||||| |||| Sbjct 145448 AAGGACTCTCTATGGATTTGGTGGTTA 145422 >seq55754 Length=545368 Score = 125 bits (138), Expect = 1e-24 Identities = 176/247 (71%), Gaps = 0/247 (0%) Strand=Plus/Minus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || ||||||||||| || ||||||||||| ||||| || ||||||||||| | || Sbjct 147675 CTCCGCGATAACATCCAGGGCATCACCAAGCCTGCTATTCGCCGTCTGGCTCGGAGAGGC 147616 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || |||||| | || || | |||| || |||| |||| |||| ||||||| || Sbjct 147615 GGCGTCAAGAGGATCAGCGGCCTCATCTACGAGGAGACGCGTGGTGTTCTGAAGATATTT 147556 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 ||| ||| |||||||| || || | ||||| ||||| ||| | ||||| || Sbjct 147555 CTCGAGAACGTTATCCGCGACGCCGTGACATATACGGAGCATGCTCGTAGGAAGACGGTG 147496 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGA 16693 ||| |||||||| | || ||||| | || | ||||| | | | |||||||| || Sbjct 147495 ACCGCCATGGATGTGGTTTATGCGCTCAAGAGGCAAGGGAGGACCTTGTATGGTTTCGGT 147436 Query 16694 AGTTAAT 16700 ||| || Sbjct 147435 GGTTGAT 147429 >seq55434 Length=211804 Score = 116 bits (128), Expect = 6e-22 Identities = 169/239 (71%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519 || |||||| |||| ||||||||||| || || ||||||||||||||| | ||||| || Sbjct 206050 GACAACATCTAAGGCATCACCAAGCCTGCGATACGTCGTCTGGCTCGTAGGGGTGGTGTG 206109 Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579 |||||| || | || ||||||| |||| | | | ||| | || |||||| | || Sbjct 206110 AAGCGTATCAACAGTATGATCTATGAGGAGACTGGAGGTGTCCTCAAAATCTTCTTGGAG 206169 Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639 | ||| || | |||||| | || ||||||||||| | | |||| ||| || || Sbjct 206170 AACGTCATTCGTGATGCCGTGACGTACACCGAGCACGCAAGGAGAAAGATTGTGACAACC 206229 Query 16640 ATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTA 16698 |||||| | || || | ||||| | || || | | | ||||| ||||| |||| Sbjct 206230 ATGGATGTGGTTTACACTTTGAAGAGGCAGGGAAGGACTCTCTATGGATTTGGGGGTTA 206288 >seq49938 Length=66529 Score = 116 bits (128), Expect = 6e-22 Identities = 169/239 (71%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519 || |||||| |||| ||||||||||| || || ||||||||||||||| | ||||| || Sbjct 51509 GACAACATCTAAGGCATCACCAAGCCTGCGATACGTCGTCTGGCTCGTAGGGGTGGTGTG 51450 Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579 |||||| || | || ||||||| |||| | | | ||| | || |||||| | || Sbjct 51449 AAGCGTATCAACAGTATGATCTATGAGGAGACTGGAGGTGTCCTCAAAATCTTCTTGGAG 51390 Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639 | ||| || | |||||| | || ||||||||||| | | |||| ||| || || Sbjct 51389 AACGTCATTCGTGATGCCGTGACGTACACCGAGCACGCAAGGAGAAAGATTGTGACAACC 51330 Query 16640 ATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTA 16698 |||||| | || || | ||||| | || || | | | ||||| ||||| |||| Sbjct 51329 ATGGATGTGGTTTACACTTTGAAGAGGCAGGGAAGGACTCTCTATGGATTTGGGGGTTA 51271 >seq55670 Length=972380 Score = 114 bits (126), Expect = 2e-21 Identities = 173/246 (70%), Gaps = 0/246 (0%) Strand=Plus/Minus Query 16453 TCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGG 16512 ||| || ||||||||||| || ||||||||||| || || || ||| ||||||| | || Sbjct 262636 TCTCCGCGATAACATCCAGGGCATCACCAAGCCCGCGATTCGCCGTTTGGCTCGCAGGGG 262577 Query 16513 TGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTT 16572 ||| || |||||| || ||| || |||| || |||| || | ||| | |||||||| Sbjct 262576 TGGTGTGAAGCGTATCAGTGGTCTGATCTACGAGGAGACCCGAGGGGTTCTCAAGATCTT 262517 Query 16573 CCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGT 16632 | | ||| || || | |||||| | || || |||||||||| | ||||| || Sbjct 262516 CTTGGAGAATGTCATTCGCGATGCTGTGACGTACACTGAGCACGCTAGGAGGAAGACCGT 262457 Query 16633 CACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 || | |||||| | || || || ||||| | || || | | | ||||| ||||| Sbjct 262456 GACAGCTATGGATGTGGTTTACGCCTTGAAGAGGCAGGGAAGGACCCTCTATGGGTTTGG 262397 Query 16693 AAGTTA 16698 |||| Sbjct 262396 CGGTTA 262391 >seq1488 Length=1339470 Score = 87.8 bits (96), Expect = 3e-13 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 ||||| || ||||| || || ||||||||||| || || || |||||||| | | || Sbjct 384761 CTTCGGGACAACATTCAGGGCATCACCAAGCCTGCGATTCGGCGTCTGGCAAGGAGAGGC 384702 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || |||||| | || || | | || || |||| || | ||| | ||||||||| Sbjct 384701 GGTGTCAAGAGGATCAGCGGTCTTATATACGAGGAGACCCGCGGCGTTCTCAAGATCTTC 384642 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 || ||| |||||||| || || | ||| || |||||||| | ||||| || Sbjct 384641 CTTGAGAACGTTATCCGCGACGCCGTGACCTACACGGAGCACGCCCGGAGGAAGACGGTG 384582 Query 16634 ACCTCCATGGATATCGTCTATGC 16656 ||| | |||||| | ||||| || Sbjct 384581 ACCGCTATGGATGTGGTCTACGC 384559 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 78978463576479