Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Juglans_20regia_20[refseq_20GCF_5F001411555.1_202015-10-22] 105,803 sequences; 699,672,627 total letters Query= NC_006820.1 Length=196280 Score E Sequences producing significant alignments: (Bits) Value seq1861 493 2e-134 seq47040 161 1e-34 seq54963 156 5e-33 seq2016 86.0 8e-12 >seq1861 Length=68153 Score = 493 bits (546), Expect = 2e-134 Identities = 695/971 (72%), Gaps = 24/971 (2%) Strand=Plus/Plus Query 137875 TGGATGACTGGATTAAACGAGATCGCTTTGTATTTGTGGGTTGGTCTGGACTACTACTTT 137934 ||||||||||| | | || | || || ||||| |||||||| || ||| |||| | Sbjct 26959 TGGATGACTGGTTACGGAGGGACCATTTCGTTTTTGTAGGTTGGTCCGGTCTATTACTCT 27018 Query 137935 TTCCCACTGCTTATTTGGCCCTTGGTGGCTGGCTTACTGGCACAACGTTTGTTACAAGCT 137994 |||| ||| ||||| ||| | || || ||| |||| || ||||| ||||| || | Sbjct 27019 TTCCTTGTGCCTATTTTGCCTTAGGGGGTTGGTTTACAGGTACAACCTTTGTAACTTCAT 27078 Query 137995 GGTACACCCACGGGTTGGCGTCTAGTTATCTTGAAGGCGCTAATTTCCTCACAGCAGCTG 138054 ||| || ||||| |||||| | ||| | |||||| || ||| | || || || | Sbjct 27079 AGTATACACACGGATTGGCGAGTTCCTATTTGGAAGGCTGCAACTTCTTAACCGCTGCAG 27138 Query 138055 TTTCGACTCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTC 138114 |||| |||| ||| || | | | || ||| | | |||| |||||||| || | | Sbjct 27139 TTTCTACTCTCGCTAATAGTTTAGCACACTCTTTGTTGTTACTATGGGGTCCAGAAACAC 27198 Query 138115 AAGGAGATATCGTCCGCTGGTTCCAACTTGGGGGACTCTGGACTTTTGTGGCGCTCCACG 138174 |||||||| | | |||| ||| | || | || ||||||||||| || ||| Sbjct 27199 AAGGAGATTTTACTTGTTGGTGTCAATTAGGTAGTCTGTGGACTTTTGTTGCTCTC---- 27254 Query 138175 GGGCCTTTAGTCTGATTGGATTCATGCTTCGCCAGTTTGAGATCTCTCG-TCTGGTAGGC 138233 | | || || || ||| | | || ||||||| | |||| |||| | | Sbjct 27255 -------TGGACTAATAGGTCTCACGTTACGTTAGTTTGAACTTGCTCGATCTGTT---C 27304 Query 138234 A--TCCGTCCCTACAACGCAATCGCATTCTCTGGTCCCATCGCTGTGTTCGTCAGCGTGT 138291 | | || || || || |||||||||||||||| ||| || ||| | || | || | Sbjct 27305 AATTGCGACCTTATAATGCAATCGCATTCTCTGCTCCAATTGCTTTTTTTTTTTTGGTAT 27364 Query 138292 TCCTGATGTATCCTTTGGGTCAATCCAGTTGGTTCTTTGCTCCCTCCTTTGGTGTGGCAG 138351 | ||||| |||| | |||||||| |||||||||||| || ||||||||| |||| Sbjct 27365 TGCTGATTTATCTACTAGGTCAATCGGGTTGGTTCTTTGTGCCTAGCTTTGGTGTAGCAG 27424 Query 138352 CAATCTTCCGATTC---CTGTTGTTCCTTCAGGGTTTCCATAACTGGACCCTCAACCCCT 138408 | || || | |||| || || ||| | |||||||| |||| ||||| | ||||| | Sbjct 27425 CTATATTTC-ATTCTTTCTCTTTTTC--TAAGGGTTTC-ATAATTGGACATTGAACCCAT 27480 Query 138409 TTCATATGATGGGCGTAGCAGGTATTCTTGGTGGTGCTCTGCTCTGTGCTATTCATGGTG 138468 ||||||||||||| || || ||| | |||| | ||||||||| || | ||||||||||| Sbjct 27481 TTCATATGATGGGGGTTGCTGGTGTAATTGGCGCTGCTCTGCTATGCGTTATTCATGGTG 27540 Query 138469 CTACAGTAGAAAATACTTTGTATGAAGATGGCGAACAATCAAATACTTTTAAAGCATTTG 138528 |||| |||||| |||||| | ||||||||| || ||||||| ||| || ||| Sbjct 27541 CTACCTTAGAAAGTACTTTATTTGAAGATGGTGATGGTGCAAATACATTTTGTGCTTTTA 27600 Query 138529 AACCTACTCAAGAAGAAGAAACCTATTCAATGGTTACTGCTAACCGTTACTGGTCGCAAA 138588 | || ||||||| |||||||| ||||||||||| || ||||||| | ||||| |||| Sbjct 27601 ACCCAACTCAAGCTGAAGAAACTTATTCAATGGTCACCGCTAACCACTTTTGGTCCCAAA 27660 Query 138589 TCTTTGGAATTGCTTTTAGTAATAAGCGTTGGCTTCACTTCTTTATGCTCTTTGTTCCCG 138648 ||||||| || ||||| ||||| |||||| | || ||| ||||||| ||||| | | Sbjct 27661 TCTTTGGGGTTACTTTTTCCAATAAACGTTGGTTACATTTCCTTATGCTATTTGTACTAG 27720 Query 138649 TCATGGGTCTCTGGACTAGTAGTATTGGTATTATTGGTCTTGCTCTTAACCTACGAGCGT 138708 | | || | |||| ||| | |||| | | ||||| ||||| |||||||| || | Sbjct 27721 TAACCAGTTTATGGATGAGTGCTCTTGGAGTAGTCGGTCTGGCTCTGAACCTACGTGCCT 27780 Query 138709 ATGATTTCGTATCGCAAGAAATTCGTGCAGCAGAAGATCCTGAATTCGAGACCTTCTACA 138768 |||| || || || || ||||| ||||||| ||||||||||||||| ||||| ||||||| Sbjct 27781 ATGACTTTGTTTCTCAGGAAATCCGTGCAGTAGAAGATCCTGAATTTGAGACTTTCTACA 27840 Query 138769 CCAAGAACATTCTTCTGAATGAAGGTCTGCGTGCCTGGATGGCTCCTGTGGATCAACCTC 138828 | || || |||||| | ||||||||| | | ||| ||||||| || ||||| |||| Sbjct 27841 CAAAAAATATTCTTTTAAATGAAGGTATTCATGCTTGGATGGAGGCTCAAGATCAGCCTC 27900 Query 138829 ACGAAAACTTT 138839 | ||||||||| Sbjct 27901 ATGAAAACTTT 27911 >seq47040 Length=8764 Score = 161 bits (178), Expect = 1e-34 Identities = 167/219 (76%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 135758 GTCGCTTACTCAGCCCCTGTTGCCGCTGCTACTGCTGTTTTCCTGGTCTACCCCTTTGGA 135817 || || || ||||| |||||||| ||||||||| |||||||| || |||| || |||| Sbjct 5687 GTTGCATATTCAGCTCCTGTTGCAGCTGCTACTACTGTTTTCTTGATCTATCCAATTGGT 5628 Query 135818 CAAGGTTCTTTCAGTGATGGTATGCCGCTTGGCATTTCTGGAACTTTTAACTACATGCTT 135877 ||||| || | | |||| ||| || || |||||||| ||||| |||| |||| || Sbjct 5627 CAAGGAAGCTTTTCTCACGGTAAGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATT 5568 Query 135878 GTTTTCCAGGCAGAACACAACATTCTCATGCATCCTTTCCACATGTTGGGAGTTGCTGGG 135937 || |||||||| || |||||||| || ||||| || || || ||||| || || ||||| Sbjct 5567 GTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCATATGTTAGGTGTAGCTGGT 5508 Query 135938 GTCTTCGGTGGTTCTCTGTTCTCTGCTATGCATGGATCT 135976 || ||||| || | || || |||||||||||| ||| Sbjct 5507 GTATTCGGCGGCTTCCTATTTAGTGCTATGCATGGTTCT 5469 >seq54963 Length=251348 Score = 156 bits (172), Expect = 5e-33 Identities = 166/219 (76%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 135758 GTCGCTTACTCAGCCCCTGTTGCCGCTGCTACTGCTGTTTTCCTGGTCTACCCCTTTGGA 135817 || || || ||||| ||||||| ||||||||||||||||| || |||| || |||| Sbjct 117193 GTTGCATATTCAGCTCCTGTTGTAGCTGCTACTGCTGTTTTATTGATCTATCCAATTGGT 117252 Query 135818 CAAGGTTCTTTCAGTGATGGTATGCCGCTTGGCATTTCTGGAACTTTTAACTACATGCTT 135877 ||||| || ||| |||||||| || || |||||||| ||||| |||| |||| || Sbjct 117253 CAAGGAAGCTTTTCTGACGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATT 117312 Query 135878 GTTTTCCAGGCAGAACACAACATTCTCATGCATCCTTTCCACATGTTGGGAGTTGCTGGG 135937 || |||||||| || |||||||| || ||||| || || |||||||| | || ||| Sbjct 117313 GTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTACGTGTAATTGGT 117372 Query 135938 GTCTTCGGTGGTTCTCTGTTCTCTGCTATGCATGGATCT 135976 || ||||| || || || || || ||||||||| ||| Sbjct 117373 GTATTCGGCGGCTCCCTATTTAGTGTTATGCATGGTTCT 117411 >seq2016 Length=232386 Score = 86.0 bits (94), Expect = 8e-12 Identities = 96/127 (76%), Gaps = 1/127 (1%) Strand=Plus/Plus Query 135832 TGATGGTATGCCGCTTGGCATTTCTGGAACTTTTAACTACATGCTTGTTTTCCAGGCAGA 135891 |||||||||||| | || | ||| | ||||| || | |||| |||| |||||||| || Sbjct 155490 TGATGGTATGCCTCCAGGAAGTTCGCGTACTTTCAAGTTCATGATTGTATTCCAGGCTGA 155549 Query 135892 ACACAACATTCTCATGCATCCTTTCCACATGTTGGGAGTTGCTGGGGTCTTCGGTGGTTC 135951 || |||| ||| |||| || || |||||||| || || ||||| || ||| |||| || Sbjct 155550 GCAGAACA-TCTTTTGCACCCATTTCACATGTTAGGTGTAGCTGGTGTATTCAGTGGCTC 155608 Query 135952 TCTGTTC 135958 || ||| Sbjct 155609 CCTCTTC 155615 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627137488771200