Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Juglans_20regia_20[refseq_20GCF_5F001411555.1_202015-10-22] 105,803 sequences; 699,672,627 total letters Query= NC_006882.2 Length=45176 Score E Sequences producing significant alignments: (Bits) Value seq47040 145 2e-30 seq54963 141 3e-29 seq2016 100 8e-17 >seq47040 Length=8764 Score = 145 bits (160), Expect = 2e-30 Identities = 168/224 (75%), Gaps = 2/224 (1%) Strand=Plus/Minus Query 19674 GTAGCATATACAGCACCACTATCAGCAGCTCTTGCTGTGTTTCTCGTT-TACCCATTTGG 19732 || |||||| |||| || | |||| ||| | |||| ||||| | | || ||| |||| Sbjct 5687 GTTGCATATTCAGCTCCTGTTGCAGCTGCTACTACTGT-TTTCTTGATCTATCCAATTGG 5629 Query 19733 GCAAGGGAGTTTTAGTGATGGTATGCCTCTTGGTATCTCTGGTACTTTTAACTTTATGTT 19792 ||||| || ||| | | |||| |||||| || || ||||||||||| ||||| ||| | Sbjct 5628 TCAAGGAAGCTTTTCTCACGGTAAGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGAT 5569 Query 19793 CGTATTCCAAGCAGAACACAATATCCTTATGCATCCGTTCCACATGCTCGGTGTTGCTGG 19852 |||||||| || || ||||| ||||||||||| || || || ||| | ||||| ||||| Sbjct 5568 TGTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCATATGTTAGGTGTAGCTGG 5509 Query 19853 CGTATTCGGTGGATCTCTTTTCTCTGCTATGCACGGAAGTTTGG 19896 |||||||| || | || || ||||||||| || ||||| Sbjct 5508 TGTATTCGGCGGCTTCCTATTTAGTGCTATGCATGGTTCTTTGG 5465 >seq54963 Length=251348 Score = 141 bits (156), Expect = 3e-29 Identities = 165/223 (74%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 19674 GTAGCATATACAGCACCACTATCAGCAGCTCTTGCTGTGTTTCTCGTTTACCCATTTGGG 19733 || |||||| |||| || | ||| ||| |||||| || | | || ||| |||| Sbjct 117193 GTTGCATATTCAGCTCCTGTTGTAGCTGCTACTGCTGTTTTATTGATCTATCCAATTGGT 117252 Query 19734 CAAGGGAGTTTTAGTGATGGTATGCCTCTTGGTATCTCTGGTACTTTTAACTTTATGTTC 19793 ||||| || ||| ||| ||||||||||| || || ||||||||||| ||||| ||| | Sbjct 117253 CAAGGAAGCTTTTCTGACGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATT 117312 Query 19794 GTATTCCAAGCAGAACACAATATCCTTATGCATCCGTTCCACATGCTCGGTGTTGCTGGC 19853 |||||||| || || ||||| ||||||||||| || || |||||| | |||| ||| Sbjct 117313 GTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTACGTGTAATTGGT 117372 Query 19854 GTATTCGGTGGATCTCTTTTCTCTGCTATGCACGGAAGTTTGG 19896 |||||||| || || || || || |||||| || ||||| Sbjct 117373 GTATTCGGCGGCTCCCTATTTAGTGTTATGCATGGTTCTTTGG 117415 >seq2016 Length=232386 Score = 100 bits (110), Expect = 8e-17 Identities = 110/145 (76%), Gaps = 1/145 (1%) Strand=Plus/Plus Query 19730 TGGGCAAGGGAGTTTTAGTGATGGTATGCCTCTTGGTATCTCTGGTACTTTTAACTTTAT 19789 ||| ||||| || ||| |||||||||||||| || | || ||||||| || || || Sbjct 155472 TGGTCAAGGAAGCTTTTCTGATGGTATGCCTCCAGGAAGTTCGCGTACTTTCAAGTTCAT 155531 Query 19790 GTTCGTATTCCAAGCAGAACACAATATCCTTATGCATCCGTTCCACATGCTCGGTGTTGC 19849 | | |||||||| || || || || || ||| |||| || || |||||| | ||||| || Sbjct 155532 GATTGTATTCCAGGCTGAGCAGAACAT-CTTTTGCACCCATTTCACATGTTAGGTGTAGC 155590 Query 19850 TGGCGTATTCGGTGGATCTCTTTTC 19874 ||| |||||| |||| || || ||| Sbjct 155591 TGGTGTATTCAGTGGCTCCCTCTTC 155615 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 144260122039068