Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Juglans_20regia_20[refseq_20GCF_5F001411555.1_202015-10-22] 105,803 sequences; 699,672,627 total letters Query= NC_006884.2 Length=178249 Score E Sequences producing significant alignments: (Bits) Value seq1861 284 1e-71 seq47040 138 1e-27 seq54963 120 3e-22 seq2016 91.5 2e-13 >seq1861 Length=68153 Score = 284 bits (314), Expect = 1e-71 Identities = 662/997 (66%), Gaps = 35/997 (4%) Strand=Plus/Plus Query 171795 TTTGACGTTCTTGATGATTGGTTAAAGAGAGATCGTTTCGTATTCATCGGATGGTCTGGT 171854 ||||| || | ||||| |||||| ||| || | |||||| || | || ||||| ||| Sbjct 26949 TTTGATATTATGGATGACTGGTTACGGAGGGACCATTTCGTTTTTGTAGGTTGGTCCGGT 27008 Query 171855 CTTTTACTTTTACCTTGTGCTTACCTAGCAATCGGAGGTTGGTTCGTAGGAACTACTTTC 171914 || ||||| || |||||||| || | || | || |||||||| ||| || || || Sbjct 27009 CTATTACTCTTTCCTTGTGCCTATTTTGCCTTAGGGGGTTGGTTTACAGGTACAACCTTT 27068 Query 171915 GTGACCTCATGGTACACACATGGTATTGCATCCTCATATCTTGAGGGAGCAAACTTTTTA 171974 || || |||| ||| ||||| || | || || ||| | || || ||||| ||| Sbjct 27069 GTAACTTCATAGTATACACACGGATTGGCGAGTTCCTATTTGGAAGGCTGCAACTTCTTA 27128 Query 171975 ACTGCAGCAGTATCAACACCTGGTGATGCTATGGGTCATAGTCTATTGTTCCTATGGGGA 172034 || || ||||| || || | | | || | | | || | | ||||| |||||||| Sbjct 27129 ACCGCTGCAGTTTCTACTCTCGCTAATAGTTTAGCACACTCTTTGTTGTTACTATGGGGT 27188 Query 172035 CCTGAGGCACAAGGAGATCTTGTACGATGGTTTCAATTAGGTGGACTATGGAACTTTGTA 172094 || || ||||||||||| || | |||| |||||||||| | || |||| ||||| Sbjct 27189 CCAGAAACACAAGGAGATTTTACTTGTTGGTGTCAATTAGGTAGTCTGTGGACTTTTGTT 27248 Query 172095 GCATTACATGGAGTCTTTGGACTCATAGGTTTCATGCTTAGACAGTTTGAGATTGCAGGA 172154 || ||| |||||| |||||| ||| | | | ||||||| |||| || Sbjct 27249 GC-----------TCTCTGGACTAATAGGTCTCACGTTACGTTAGTTTGAACTTGCTCGA 27297 Query 172155 CTTGTTGGGATACGTCCTTACAACGCACTAGCATTCTCAGCAGTTATTGCAGTATTCACG 172214 |||| | || ||||| || ||| | |||||||| || ||||| | || Sbjct 27298 TCTGTTCAATTGCGACCTTATAATGCAATCGCATTCTCTGCTCCAATTGCTTTTTTTTTT 27357 Query 172215 AGCATCTTTCTAATATATCCATTAGGTCAGCATAGTTGGTTCTTCGCACCTTCATTTGGT 172274 | || || || |||| | ||||||| |||||||||| | ||| |||||| Sbjct 27358 TTGGTATTGCTGATTTATCTACTAGGTCAATCGGGTTGGTTCTTTGTGCCTAGCTTTGGT 27417 Query 172275 GTCGCAGCAATCTTTCGTTATAT-TTTATTCATACAGGGTTTCCACAATATAACTCTTAA 172333 || ||||| || |||| || | | | | || || ||||||| || ||| || | || Sbjct 27418 GTAGCAGCTATATTTCATTCTTTCTCTTTTTCTA-AGGGTTT-CATAATTGGACATTGAA 27475 Query 172334 TCCATTTCATATGATGGGTGTAGCAGGTATACTTGGTGGAGCATTACTATGTGCCATACA 172393 ||||||||||||||||| || || ||| || |||| | || | ||||| | || || Sbjct 27476 CCCATTTCATATGATGGGGGTTGCTGGTGTAATTGGCGCTGCTCTGCTATGCGTTATTCA 27535 Query 172394 TGGTGCAACAGTACAGAACACATTGTATGAAGACACATCACAATACACTGAAGGTAAGAT 172453 |||||| || || | | || || | |||||| || | | | | Sbjct 27536 TGGTGCTACCTTAGAAAGTACTTTATTTGAAGA---------------TG--GTGATGGT 27578 Query 172454 TCAATCTACAACTTTCAGAGCATTCGATCCTACACAGGAAGAAGAAACTTATAGTATGAT 172513 ||| |||| || | || || | || || || | |||||||||||| ||| | Sbjct 27579 GCAA-ATACA---TTTTGTGCTTTTAACCCAACTCAAGCTGAAGAAACTTATTCAATGGT 27634 Query 172514 TACTGCTAACAGATTCTGGTCACAGATATTTGGTATAGCATTTTCAAACAAAAGATTCTT 172573 || |||||| || ||||| || || ||||| | | ||||| || ||| | | || Sbjct 27635 CACCGCTAACCACTTTTGGTCCCAAATCTTTGGGGTTACTTTTTCCAATAAACGTTGGTT 27694 Query 172574 ACACTTCCTTATGTTGTTCGTACCTGTCATGGGTATGTGGACATCATCTATAGGTATCGT 172633 ||| ||||||||| | || |||| || | || | |||| || | || | || Sbjct 27695 ACATTTCCTTATGCTATTTGTACTAGTAACCAGTTTATGGATGAGTGCTCTTGGAGTAGT 27754 Query 172634 AGGTCTTGCACTTAACCTCAGAGCATACGACTTTGTATCTCAAGAGATAAGAGCAGCAGA 172693 ||||| || || ||||| | || || |||||||| ||||| || || | |||| ||| Sbjct 27755 CGGTCTGGCTCTGAACCTACGTGCCTATGACTTTGTTTCTCAGGAAATCCGTGCAGTAGA 27814 Query 172694 AGACCCAGAGTTTGAAACCTTCTACACTAAGAACATTCTTCTTAATGAAGGTATGAGAGC 172753 ||| || || ||||| || |||||||| || || |||||| | ||||||||||| || Sbjct 27815 AGATCCTGAATTTGAGACTTTCTACACAAAAAATATTCTTTTAAATGAAGGTATTCATGC 27874 Query 172754 ATGGATGTCATCTGTCGATCAACCCCATGAGAACTTT 172790 |||||| || ||||| || ||||| |||||| Sbjct 27875 TTGGATGGAGGCTCAAGATCAGCCTCATGAAAACTTT 27911 >seq47040 Length=8764 Score = 138 bits (152), Expect = 1e-27 Identities = 162/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 171050 GTAGCATACTCAGCACCTGTATCTGCAGCATTTGCAGTATTCCTTGTGTATCCATTCGGT 171109 || ||||| ||||| ||||| | || || | | || ||| | | |||||| | ||| Sbjct 5687 GTTGCATATTCAGCTCCTGTTGCAGCTGCTACTACTGTTTTCTTGATCTATCCAATTGGT 5628 Query 171110 CAGGGTTCATTCTCTGATGGTATGCCACTAGGTATCTCAGGTACGTTCAACTTCATGTTC 171169 || || || ||| | |||| ||| ||||| || || ||||| |||||||||||| | Sbjct 5627 CAAGGAAGCTTTTCTCACGGTAAGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATT 5568 Query 171170 GTGTTCCAAGCAGAACACAACATACTAATGCACCCCTTCCATATGGCAGGTGTAGCAGGT 171229 || ||||| || || |||||||| || |||||||| || |||||| ||||||||| ||| Sbjct 5567 GTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCATATGTTAGGTGTAGCTGGT 5508 Query 171230 ATGTTCGGTGGTAGTCTCTTCAGTGCAATGCACGGTTCT 171268 | ||||| || || || ||||| ||||| |||||| Sbjct 5507 GTATTCGGCGGCTTCCTATTTAGTGCTATGCATGGTTCT 5469 >seq54963 Length=251348 Score = 120 bits (132), Expect = 3e-22 Identities = 158/219 (72%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 171050 GTAGCATACTCAGCACCTGTATCTGCAGCATTTGCAGTATTCCTTGTGTATCCATTCGGT 171109 || ||||| ||||| ||||| || || ||| || || | | |||||| | ||| Sbjct 117193 GTTGCATATTCAGCTCCTGTTGTAGCTGCTACTGCTGTTTTATTGATCTATCCAATTGGT 117252 Query 171110 CAGGGTTCATTCTCTGATGGTATGCCACTAGGTATCTCAGGTACGTTCAACTTCATGTTC 171169 || || || ||||| |||||||| ||||| || || ||||| |||||||||||| | Sbjct 117253 CAAGGAAGCTTTTCTGACGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATT 117312 Query 171170 GTGTTCCAAGCAGAACACAACATACTAATGCACCCCTTCCATATGGCAGGTGTAGCAGGT 171229 || ||||| || || |||||||| || |||||||| || || ||| | ||||| ||| Sbjct 117313 GTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTACGTGTAATTGGT 117372 Query 171230 ATGTTCGGTGGTAGTCTCTTCAGTGCAATGCACGGTTCT 171268 | ||||| || || || |||| ||||| |||||| Sbjct 117373 GTATTCGGCGGCTCCCTATTTAGTGTTATGCATGGTTCT 117411 >seq2016 Length=232386 Score = 91.5 bits (100), Expect = 2e-13 Identities = 102/135 (76%), Gaps = 1/135 (1%) Strand=Plus/Plus Query 171119 TTCTCTGATGGTATGCCACTAGGTATCTCAGGTACGTTCAACTTCATGTTCGTGTTCCAA 171178 || |||||||||||||| | ||| | || |||| ||||| |||||| | || ||||| Sbjct 155485 TTTTCTGATGGTATGCCTCCAGGAAGTTCGCGTACTTTCAAGTTCATGATTGTATTCCAG 155544 Query 171179 GCAGAACACAACATACTAATGCACCCCTTCCATATGGCAGGTGTAGCAGGTATGTTCGGT 171238 || || || ||||| || ||||||| || || ||| ||||||||| ||| | ||| || Sbjct 155545 GCTGAGCAGAACAT-CTTTTGCACCCATTTCACATGTTAGGTGTAGCTGGTGTATTCAGT 155603 Query 171239 GGTAGTCTCTTCAGT 171253 || ||||||||| Sbjct 155604 GGCTCCCTCTTCAGT 155618 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 569514598126920