Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Juglans_20regia_20[refseq_20GCF_5F001411555.1_202015-10-22] 105,803 sequences; 699,672,627 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq50617 154 2e-32 seq1761 96.9 4e-15 seq1889 86.0 8e-12 >seq50617 Length=115889 Score = 154 bits (170), Expect = 2e-32 Identities = 387/580 (67%), Gaps = 10/580 (2%) Strand=Plus/Minus Query 33304 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 33363 || ||||| ||||| ||||| |||||||| | || || |||||||| || ||||| Sbjct 92430 CACGCGAAGTCGCAATGCAGCCCCTCGTCACGGGAGATCAGCTCGTTGGAGAAGGTGAGA 92371 Query 33364 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAG 33423 || ||||| | || |||||||| | ||| ||||||| ||| ||| || |||||| Sbjct 92370 CCAGGCATCAACCCGCGCTTTTTCAACCAGAATATGGCGCAGAAGCTTCCGGAGAAGAAG 92311 Query 33424 ATTCCTTCTACTGCA-GCAAAGGCAATAAGTCTCTCTCCATA--AC-CGGCGCTGTCATG 33479 || ||||| || ||| || ||||| || || | ||| || | || | | || ||| Sbjct 92310 ATCCCTTCGAC-GCACGCGAAGGCGATGAGACGCTCCGCAAAGGACTCCGAGCCGTCG-- 92254 Query 33480 TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATT 33539 ||||| | ||||| | ||||||||| ||||| || | || || ||||||| Sbjct 92253 -ATCCAGCGCAGGGCCCACTGGGCCTTCTTAGCCACACAGGGGACGGTCTCGATGGCATG 92195 Query 33540 AAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACAT 33599 ||||| || || |||| ||| || | || || || | ||| ||||||||||| Sbjct 92194 GAAGAGGCGGTGCTTCTCATCTGAATCCTTGATGTAGGTCTCCAGCAACAGACTATACAT 92135 Query 33600 TTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAAT 33659 || || ||||| ||||| ||||| ||||| || |||||||| | ||||||| || Sbjct 92134 CTCGGAGTGAATATTTTCGATGGCAATCTGGAAGCCGTAGAAGGCGCGGGCCTCGGCAAC 92075 Query 33660 CTGTACTTCTGTACAAAATCGTTCC-GCCAAATTTTCATTCACTATTCCGTCACTGGCTG 33718 ||| || || | || | | | || || | || || || || || || |||| Sbjct 92074 CTGGACCTC-CTTCATGAACCTCCCAGCGAGGTTCTCCAAAACGATGCCATCTGAAGCTG 92016 Query 33719 CAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAAT 33778 |||| || || | || || ||||| | ||| ||||| || || || | ||| | Sbjct 92015 CAAAGAAAGCTAGGACGTGGGAAATAAAGTGTTTCTCGTCGGGGGTGAGGGCTTCCCATT 91956 Query 33779 CATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTT 33838 || || | ||| | || || || || | ||||| || || ||||| || || | Sbjct 91955 GGCGGAGGTCCTGAGAGAGGTCAACCTCCTCGGCAGTCCAGAAAGAGGCCTCGGCTTTCT 91896 Query 33839 TATACATGTTCCAGATGTCATAATATTGGATTGGGAAAAT 33878 | ||||| | ||| || || || ||||| || || || Sbjct 91895 TGTACATCTCCCATATTTCGGGGTACTGGATCGGAAACAT 91856 >seq1761 Length=289715 Score = 96.9 bits (106), Expect = 4e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 63611 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATT 63670 ||| || |||||||| | ||| ||||| || || || ||||| | ||| | | || Sbjct 164710 AGTCCCTGCATTAAAAAGGGTGGGAGACGCATGAGTGAACCACCGCTGAGACATCATATG 164769 Query 63671 GTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAA 63730 ||| || | ||||| || || || || | |||||||| || || || | ||| || Sbjct 164770 GTATGTTTTGATAGCAGAATCAATGTCATTCTTGTGAATTCCAACAGCAACCCTCATCAA 164829 Query 63731 CATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAA 63790 |||||| ||||||||||| || | ||| | | ||||| | ||||||| | || | Sbjct 164830 CATGTGTTGAGGTCTTTCTACAACCTTTCCTTGGACCTTCAATAGGTAGGATCTCTCAAG 164889 Query 63791 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAAC 63841 ||||| |||||||| || | || ||||||||| || || || || || Sbjct 164890 GGTTTTGAAACCAAAGTAATCATAGTCAAAGTCTCGATCATAGATGATCAC 164940 >seq1889 Length=778003 Score = 86.0 bits (94), Expect = 8e-12 Identities = 109/150 (73%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 63115 TTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGAC 63174 |||| ||| | || ||||| || || || ||||||||| || |||| || ||| Sbjct 332904 TTTCATATTGGGTGTACAAATTGTCAAATTCTTCTCCCCAATAATCAGCCAAACCGGGAG 332963 Query 63175 ATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGAT 63234 |||| || || | ||| ||||| | ||| ||| | ||||| || ||||||||| | Sbjct 332964 CCTCATTTGGGCAAAACAAAGACCATTGTCCATCACCTCGCACTCTTTCCATAAAGAGGT 333023 Query 63235 CAGGAATCCAAAGAGCTATAAATAGATCTC 63264 |||| ||||||||||| ||||||||||| Sbjct 333024 CAGGTATCCAAAGAGCATAAAATAGATCTC 333053 Score = 86.0 bits (94), Expect = 8e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 63611 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATT 63670 |||||| |||||||| | |||||| | ||| || || ||||| | ||| | | || Sbjct 333828 AGTTCCTGCATTAAAAAGGGTAGGGGTAGCATGAGTGAACCAACGCTGAGACATCAAATG 333887 Query 63671 GTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAA 63730 ||| |||| || | | ||||| || || || || || || || || || | |||||| Sbjct 333888 GTATGTCTTAAGAACAGAGTCCATGTCATCTTTGTGGATACCAACAGCAACTCTCATTAA 333947 Query 63731 CATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAA 63790 |||||||||||| ||||| || | ||| | | || || | || || | || | Sbjct 333948 CATGTGCTGAGGCCTTTCCACAACCTTCCCATCAACCTTTAAAAGATATGACCTCTCAAG 334007 Query 63791 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTC 63825 |||||| || |||||||| | ||| ||| |||| Sbjct 334008 AGTTTTGAAGCCAAAATAATCGTAGTCAAAATCTC 334042 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622123328967480