Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Juglans_20regia_20[refseq_20GCF_5F001411555.1_202015-10-22] 105,803 sequences; 699,672,627 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq55622 109 1e-18 seq1889 102 2e-16 seq51957 98.7 3e-15 seq1761 89.7 1e-12 seq54143 87.8 5e-12 >seq55622 Length=839323 Score = 109 bits (120), Expect = 1e-18 Identities = 98/123 (80%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 111702 CAGTTTTATGTACACGACGGGATGCTTTCATGCCAAATGTATCAGCGATCTGCTGATATT 111761 ||||| |||||| | | ||| ||||||||| |||||||||||||| ||||||||||| Sbjct 331650 CAGTTCTATGTAGCCAATGGGGAGCTTTCATGTCAAATGTATCAGCGGTCTGCTGATATG 331591 Query 111762 GGTCTTGGTGTTCCGTTTAATATTGCAAGTTACGCACTACTTACTTGCTTAATCGCTCAT 111821 |||||||||||||| ||||| ||||| ||| || || | || || | ||||||||| Sbjct 331590 GGTCTTGGTGTTCCATTTAACATTGCGTCTTATGCTTTATTGACATGTATGATCGCTCAT 331531 Query 111822 TTT 111824 || Sbjct 331530 GTT 331528 >seq1889 Length=778003 Score = 102 bits (112), Expect = 2e-16 Identities = 166/235 (71%), Gaps = 3/235 (1%) Strand=Plus/Minus Query 363607 TGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAAT 363666 ||||||||| | ||||| || ||| ||| |||| || ||||| || | ||| | Sbjct 333659 TGCTTTCTTGTGTGTATGAAAGATGATAGCATTCAGGGAATATTTGATACCTTGAAGGAA 333600 Query 363667 TGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGCA 363726 |||||| ||||| ||| || || ||||||||| | || | || ||| | |||||| Sbjct 333599 TGTGCTGTTATTAGCAAATCAGCTGGAGGAATTGGTTTCTCTGTTCATAATATCCGTGCA 333540 Query 363727 -CAGAACAGTTACATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCG 363785 ||| ||| |||||| | || ||| || || ||||| | ||||| |||||||| Sbjct 333539 ACAGG-CAGCTACATTTGTGGGACAAATGGGACTTCTAATGGCATTGTTCCTATGCTTCG 333481 Query 363786 TGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGG 363840 ||||||| | | ||||| | || || || || || ||||||||| | |||||| Sbjct 333480 TGTGTTTAATGACACTGCTCGTTATGTTGATCAAGGGGGAGGAAAGAG-AAAGGG 333427 >seq51957 Length=105213 Score = 98.7 bits (108), Expect = 3e-15 Identities = 157/220 (71%), Gaps = 4/220 (2%) Strand=Plus/Plus Query 363622 ATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCC 363681 ||| | || ||| ||| || ||||| | |||||| | ||| | || ||| |||| | Sbjct 19806 ATGCAAGATGATAGCATTGAAGGTATATATGACACCTTGAAGGAATGCGCTGTTATCAGC 19865 Query 363682 AAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGC-ACAGAACAGTTACAT 363740 || || || ||||||||||| || |||||||| |||| || || | | ||||| || Sbjct 19866 AAATCAGCTGGTGGAATTGGTGTCTCTGTCCACAATATTCGCGCTACTGGA-AGTTATAT 19924 Query 363741 TCGCGGCAC-AGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATA 363799 ||| ||||| | |||| | || ||||| | ||||| ||||| ||||| || | ||| Sbjct 19925 TCGTGGCACAAATGGGACA-TCCAATGGCATTGTTCCAATGCTACGTGTATTCAATGATA 19983 Query 363800 CTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGG 363839 | ||| | || || || || || ||||| ||| | ||||| Sbjct 19984 CGGCGCGTTATGTTGATCAAGGGGGAGGCAAGAGGAAAGG 20023 >seq1761 Length=289715 Score = 89.7 bits (98), Expect = 1e-12 Identities = 155/220 (70%), Gaps = 4/220 (2%) Strand=Plus/Minus Query 363622 ATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCC 363681 ||||| || ||| ||| || || || | |||||| | ||| | |||||| |||| | Sbjct 164557 ATGAAAGATGATAGCATTGAAGGCATATATGACACCTTGAAGGAGTGTGCTGTTATCAGC 164498 Query 363682 AAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCG-TGCACAGAACAGTTACAT 363740 || || || ||||||||||| || ||||||| |||| | ||| | |||||| || Sbjct 164497 AAATCGGCTGGAGGAATTGGTGTTTCTGTCCACAACATTCGTTCCACTG-GCAGTTATAT 164439 Query 363741 TCGCGGCACAGGGGGATAC-TCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATA 363799 ||| || ||| || ||| || ||||| | ||||| ||||| ||||| || | ||| Sbjct 164438 TCGTGGAACAAATGG-TACATCTAATGGCATTGTTCCTATGCTACGTGTCTTCAATGATA 164380 Query 363800 CTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGG 363839 |||| | || || || || || || || ||| | ||||| Sbjct 164379 CTGCACGTTATGTTGATCAAGGGGGGGGCAAGAGGAAAGG 164340 >seq54143 Length=39111 Score = 87.8 bits (96), Expect = 5e-12 Identities = 77/96 (80%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 111729 TCATGCCAAATGTATCAGCGATCTGCTGATATTGGTCTTGGTGTTCCGTTTAATATTGCA 111788 |||||||||||||||||||| |||||||| || || |||||||| || || || |||||| Sbjct 4892 TCATGCCAAATGTATCAGCGCTCTGCTGACATGGGCCTTGGTGTGCCTTTCAACATTGCA 4833 Query 111789 AGTTACGCACTACTTACTTGCTTAATCGCTCATTTT 111824 ||| || || || || ||| | || |||||| || Sbjct 4832 TCTTATGCTCTTCTGACATGCATGATTGCTCATGTT 4797 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1301586772637946