Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Juglans_20regia_20[refseq_20GCF_5F001411555.1_202015-10-22] 105,803 sequences; 699,672,627 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq55116 100 2e-16 seq1025 98.7 9e-16 seq1868 95.1 1e-14 seq49365 91.5 1e-13 seq54980 86.0 5e-12 seq24692 86.0 5e-12 seq1014 86.0 5e-12 >seq55116 Length=591887 Score = 100 bits (110), Expect = 2e-16 Identities = 143/199 (72%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| ||||| | || ||||| | ||||| | ||||| ||| | Sbjct 230425 ATGCAGATTTTTGTCAAAACGCTCACCGGAAAGACTATTACTCTTGAAGTTGAGAGTTCC 230366 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||| || | || || ||| ||| ||||||||||| || || || ||||| Sbjct 230365 GACACCATTGATAACGTGAAGGCAAAAATTCAGGACAAAGAAGGAATTCCCCCAGATCAG 230306 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGC-GATTATAA 24169 ||||| ||||||| | || ||||| ||||| |||| | | ||| | || |||||||| Sbjct 230305 CAGAGGCTGATTTTTGCGGGAAAGCAGCTCGAGGATGGCCG-AACTTTGGCTGATTATAA 230247 Query 24170 CATTCAAAAAGAATCTACA 24188 ||||| || || |||||| Sbjct 230246 TATTCAGAAGGAGTCTACA 230228 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| || || | |||||||| | || || |||| || ||| | Sbjct 230653 ATGCAGATCTTTGTCAAGACTCTTACTGGAAAGACCATAACTCTCGAGGTGGAGAGCTCT 230594 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || || || || | |||||| ||| || ||||| || || || || || || || Sbjct 230593 GATACTATTGATAACGTCAAAGCAAAAATACAGGACAAGGAGGGAATTCCCCCAGACCAG 230534 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGC-GATTATAA 24169 ||||| || || | | || ||||||||||| |||| | ||| | ||| |||||||| Sbjct 230533 CAGAGGCTTATCTTTGCTGGAAAGCAACTCGAGGATGGCCGAACTCT-AGCTGATTATAA 230475 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 ||| || |||||||| || | || || || || | |||||||| || Sbjct 230474 CATCCAGAAAGAATCCACCCTCCACTTGGTTCTACGTTTGAGAGGTGG 230427 >seq1025 Length=2429094 Score = 98.7 bits (108), Expect = 9e-16 Identities = 162/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 |||||| | ||||| || || || ||||||||| | ||||| | || || ||| | Sbjct 1182144 AATGCAGATTTTTGTCAAGACCTTGACTGGAAAAACCATTACTTTGGAGGTTGAGAGCTC 1182203 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 ||| ||||| || | || || |||||| ||||||||||| || || || || || Sbjct 1182204 CGATACCATTGATAATGTGAAGGCTAAGATTCAAGACAAAGAAGGTATCCCACCAGACCA 1182263 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGAT-GACAGAAACGTCAG-CGATTAT 24167 ||||| |||||| | |||||||| | || ||| ||| | || | || |||||| Sbjct 1182264 GCAGAGGTTGATTTTTGCTGGCAAGCAGTTAGAGGATGGACGG--ACCTTAGCCGATTAC 1182321 Query 24168 AACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 || |||||||| ||||| || | || || ||| | | ||| ||||||| Sbjct 1182322 AATATTCAAAAGGAATCGACTTTGCACTTGGTGCTGCGTTTGCGAGGAGG 1182371 Score = 86.0 bits (94), Expect = 5e-12 Identities = 113/157 (72%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| |||||||| ||||| || | |||||| | || |||||| Sbjct 1182601 ATGCAGATCTTTGTGAAAACATTGACTGGGAAGACCATTACCTTGGAGGTCGAGAGTTCT 1182660 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || || || || | || ||| ||||||| ||||||||||| |||||||| ||||| Sbjct 1182661 GATACAATTGATAATGTGAAAGCAAAGATTCAGGACAAAGAAGGAATACCTCCAGATCAG 1182720 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATG 24147 ||||| || || | | || || || || ||||||| Sbjct 1182721 CAGAGGCTTATCTTTGCGGGTAAACAGCTTGAAGATG 1182757 >seq1868 Length=298818 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || ||||| | || || || | || ||| |||| |||||| | Sbjct 223927 ATGCAGATCTTCGTCAAAACCCTCACCGGGAAGACCATCACCCTCGAGGTCGAGAGTTCC 223986 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | ||||| ||||| ||||| ||||| || ||||||||||| Sbjct 223987 GACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAAGGTATCCCTCCCGATCAG 224046 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| | ||||| | || |||||||||| | || |||| | | | | ||| |||||| Sbjct 224047 CAGCGTCTGATCTTCGCCGGCAAGCAATTGGAGGATGGTCGCACCCTTGCCGACTATAAC 224106 Query 24171 ATTCAAAAAGAATCTAC 24187 ||||| || || || || Sbjct 224107 ATTCAGAAGGAGTCCAC 224123 >seq49365 Length=33059 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | || || ||||| | || || || | || ||| |||| || ||| | | Sbjct 26989 ATGCAAATCTTCGTGAAAACTCTCACCGGCAAGACCATCACCCTCGAGGTGGAGAGCTCC 27048 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | || || ||||| || || |||||||| || || || || Sbjct 27049 GACACCATCGACAACGTTAAGGCCAAGATCCAGGATAAGGAAGGCATCCCACCGGACCAG 27108 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| ||||| | || ||| ||||| |||||||| | ||| | | || ||| || || Sbjct 27109 CAGAGGCTGATCTTCGCCGGAAAGCAGCTCGAAGACGGCAGGACCCTCGCCGACTACAAT 27168 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTG 24200 || || || ||||| || | ||| | ||| Sbjct 27169 ATCCAGAAGGAATCAACCCTCCATCTCGTG 27198 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 ||||||| | || || || || || || || || |||| ||| | || || ||| | Sbjct 27444 AATGCAAATCTTCGTCAAGACCTTGACAGGGAAGACGATCACCCTGGAGGTGGAGAGCTC 27503 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 ||||||||||| | || || ||||| ||||| || ||||| || || || || Sbjct 27504 GGACACCATCGACAACGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCA 27563 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 ||||| || |||| || ||||||||| || || || | | ||| | || ||||||||| Sbjct 27564 GCAGAGGCTTATTTTCGCCGGCAAGCAGCTGGAGGACGGCCGAACCCTCGCCGATTATAA 27623 Query 24170 CATTCAAAAAGAATCTAC 24187 || ||||| || || || Sbjct 27624 TATCCAAAAGGAGTCCAC 27641 >seq54980 Length=436967 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || ||||| |||| || || | || ||| |||| |||||| || Sbjct 429355 ATGCAGATCTTCGTGAAAACCCTAACCGGGAAGACCATCACCCTCGAGGTCGAGTCCTCT 429296 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | || || ||||| ||||| || ||||| || ||||| || Sbjct 429295 GACACCATCGACAATGTGAAGGCTAAGATCCAGGACAAGGAGGGCATCCCGCCCGACCAG 429236 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| | || || | || ||| ||||| ||||| || | | | | | | ||| |||||| Sbjct 429235 CAGCGTCTCATCTTCGCCGGAAAGCAGCTCGAGGACGGCCGTACCTTAGCCGACTATAAC 429176 Query 24171 ATTCAAAAAGAATCTAC 24187 || || || || ||||| Sbjct 429175 ATCCAGAAGGAGTCTAC 429159 >seq24692 Length=691 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || ||||| |||| || || | || ||| |||| |||||| || Sbjct 42 ATGCAGATCTTCGTGAAAACCCTAACCGGGAAGACCATCACCCTCGAGGTCGAGTCCTCT 101 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | || || ||||| ||||| || ||||| || ||||| || Sbjct 102 GACACCATCGACAATGTGAAGGCTAAGATCCAGGACAAGGAGGGCATCCCGCCCGACCAG 161 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| | || || | || ||| ||||| ||||| || | | | | | | ||| |||||| Sbjct 162 CAGCGTCTCATCTTCGCCGGAAAGCAGCTCGAGGACGGCCGTACCTTAGCCGACTATAAC 221 Query 24171 ATTCAAAAAGAATCTAC 24187 || || || || ||||| Sbjct 222 ATCCAGAAGGAGTCTAC 238 >seq1014 Length=2264649 Score = 86.0 bits (94), Expect = 5e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | ||||| ||||| || || |||||| | || || | |||||||| | Sbjct 108823 ATGCAAATCTTTGTTAAAACCTTGACGGGAAAAACCATAACTTTGGAAGTCGAAAGCTCG 108882 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||| || | ||||| ||||| ||||| || || || || || || ||| Sbjct 108883 GACACCATTGATAATGTCAAGGCTAAGATCCAAGACAAGGAGGGTATCCCACCAGACCAA 108942 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGA-TGACAGAAACGTCAGCGATTATAA 24169 ||||| |||| | | ||||||||||| ||||| | | || || | ||| ||||| Sbjct 108943 CAGAGGTTGATCTTTGCTGGCAAGCAACTTGAAGACGGTCGGACAC-TTGCCGACTATAA 109001 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTG 24200 || ||||| ||||| || | || || ||| Sbjct 109002 TATCCAAAAGGAATCAACCCTCCACTTGGTG 109032 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429381608679465