Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Juglans_20regia_20[refseq_20GCF_5F001411555.1_202015-10-22] 105,803 sequences; 699,672,627 total letters Query= NC_007767.1 Length=132959 Score E Sequences producing significant alignments: (Bits) Value seq55116 113 4e-20 seq1025 100 2e-16 seq1014 91.5 1e-13 >seq55116 Length=591887 Score = 113 bits (124), Expect = 4e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||| |||||||||||||||||||| ||||| || ||||| | ||| ||| | Sbjct 230425 ATGCAGATTTTTGTCAAAACGCTCACCGGAAAGACTATTACTCTTGAAGTTGAGAGTTCC 230366 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 ||||| ||| | || || ||||||| || |||||||| | ||| |||||| Sbjct 230365 GACACCATTGATAACGTGAAGGCAAAAATTCAGGACAAAGAAGGAATTCCCCCAGATCAG 230306 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465 || || || |||| |||||| || || | || |||| | ||| |||| |||||||| Sbjct 230305 CAGAGGCTGATTTTTGCGGGAAAGCAGCTCGAGGATGGCCGAACTTTGGCTGATTATAAT 230246 Query 115466 ATTCAAAAAGAGTCTAC 115482 ||||| || |||||||| Sbjct 230245 ATTCAGAAGGAGTCTAC 230229 >seq1025 Length=2429094 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 115285 AATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAG 115344 |||||| ||||||||||| || | || |||||||||||||| | || ||| | Sbjct 1182144 AATGCAGATTTTTGTCAAGACCTTGACTGGAAAAACCATTACTTTGGAGGTTGAGAGCTC 1182203 Query 115345 CGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 ||| || ||| | || || || ||| || |||||||| |||| || || Sbjct 1182204 CGATACCATTGATAATGTGAAGGCTAAGATTCAAGACAAAGAAGGTATCCCACCAGACCA 1182263 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 ||| || | |||| ||| ||||| || ||||| |||| ||| | |||||||| || Sbjct 1182264 GCAGAGGTTGATTTTTGCTGGCAAGCAGTTAGAGGATGGACGGACCTTAGCCGATTACAA 1182323 Query 115465 CATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 |||||||| || || ||| | || ||||| || | ||||||||||| Sbjct 1182324 TATTCAAAAGGAATCGACTTTGCACTTGGTGCTGCGTTTGCGAGGAGG 1182371 Score = 87.8 bits (96), Expect = 2e-12 Identities = 161/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAA-CG-GAGTCCA 115343 ||||| |||||||| || || || || |||||||||||||| | || || |||| | Sbjct 1182373 ATGCAGATTTTTGTGAAGACTCTGACCGGAAAAACCATTACATTGGAGGTCGAGAGTTCG 1182432 Query 115344 GCGACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGAT 115402 | |||| ||| |||| || || || ||| || |||||||| | || ||| Sbjct 1182433 G--ACACAATTG-ACAATGTCAAGGCGAAGATTCAGGACAAAGAAGGTATTCCACCAGAT 1182489 Query 115403 CAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTAT 115462 |||||||| ||||| | ||| ||||| || | ||||| | | || | || ||||| Sbjct 1182490 CAGCAAAGGCTTATCTTTGCAGGCAAGCAGCTTGAAGACGGGAGGACTCTTGCAGATTAC 1182549 Query 115463 AACATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 || ||||| || |||||||| | ||| ||||| || | |||| || || Sbjct 1182550 AATATTCAGAAGGAGTCTACCCTTCATCTGGTGCTGCGCCTGCGTGGTGG 1182599 >seq1014 Length=2264649 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 115285 AATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAG 115344 |||||| ||||| || || || | || |||||||||||||| | || ||| Sbjct 109278 AATGCAGATTTTCGTTAAGACCTTGACTGGAAAAACCATTACTTTGGAGGTTGAGAGTTC 109337 Query 115345 CGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 ||| ||| ||| | || || |||||| || |||||||| |||| ||| || Sbjct 109338 CGATACTATTGATAATGTGAAGGCTAAAATTCAAGACAAAGAAGGTATCCCACCTGACCA 109397 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 ||| || | |||| ||| ||||| || |||||||||| | ||| | || ||||| || Sbjct 109398 GCAGAGGTTGATTTTTGCTGGCAAGCAGTTAGAAGATGGAAGGACCTTAGCAGATTACAA 109457 Query 115465 CATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGGAA 115514 || ||||| || || || | || ||||| || | ||||| || |||| Sbjct 109458 TATCCAAAAGGAATCGACACTGCACTTGGTGCTGCGTTTGCGTGGCGGAA 109507 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424795529944360