Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Juglans_20regia_20[refseq_20GCF_5F001411555.1_202015-10-22] 105,803 sequences; 699,672,627 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq49365 107 2e-18 seq50979 104 2e-17 seq1868 100 2e-16 seq1025 98.7 8e-16 seq1014 96.9 3e-15 seq45900 91.5 1e-13 seq55116 89.7 4e-13 >seq49365 Length=33059 Score = 107 bits (118), Expect = 2e-18 Identities = 154/215 (72%), Gaps = 4/215 (2%) Strand=Plus/Minus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| || || |||||||||||||| || || || ||||| | |||| | ||||| Sbjct 27656 AGCACCAGGTGGAGGGTGGACTCCTTTTGGATATTATAATCGGCGAGGGTTCGGCCGTCC 27597 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842 |||| || ||||| || ||||||||| ||| |||||| || | |||||| ||||| Sbjct 27596 TCCAGCTGCTTGCCGGCGAAAATAAGCCTCTGCTGGTCCGGGGGGATGCCCTCCTTGTCC 27537 Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 || || || |||||| | | | | ||||| | |||| |||| |||||| | Sbjct 27536 TGGATCTTGGC--CTTCACGTTGTCGATGGTGTCCGAGCTCTCCACCTCCAGGGTGATCG 27479 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936 | || || |||| || ||||| || || |||||| Sbjct 27478 TCTTCCCTGTCAAGGTCTTGACGAAGATTTGCATT 27444 Score = 87.8 bits (96), Expect = 1e-12 Identities = 159/231 (69%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 16707 ACCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGG 16766 |||| || || || | || || | || || || ||||||||||| || |||||||| | Sbjct 27901 ACCCACCACGGAGACGGAGGACAAGGTGAAGGGTAGACTCCTTTTGAATATTGTAGTCCG 27842 Query 16767 CCATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAG 16826 | | ||| | ||||||| ||| ||||| ||| |||| |||| ||| ||||| | Sbjct 27841 CAAGGGTGCGACCATCCTCCAGTTGCTTGCCGGCAAAAATCAGCCTCTGCTGGTCAGGTG 27782 Query 16827 GCACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTC 16884 | | ||||| ||||| || || || |||||| | | | | ||||| | ||| Sbjct 27781 GGATCCCCTCCTTGTCCTGGATCTTGGC--CTTCACATTGTCGATGGTGTCCGAGCTCTC 27724 Query 16885 CGTTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 | || | ||||||||| || || || || || || || || |||||||| Sbjct 27723 CACCTCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTCACGAAGATCTGCAT 27673 >seq50979 Length=594689 Score = 104 bits (114), Expect = 2e-17 Identities = 156/220 (71%), Gaps = 4/220 (2%) Strand=Plus/Plus Query 16718 AGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTG 16777 ||||| || || | || ||||| |||||||| || || ||||||||||| | ||| | Sbjct 43778 AGCCTGAGGACAAGGTGGAGCGTCGACTCCTTCTGGATATTGTAGTCGGCTAGGGTCCGG 43837 Query 16778 GCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCT 16837 ||||||| | || ||||| || | || || ||||| |||||| || | |||||| Sbjct 43838 CCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGTGGGATGCCCTCC 43897 Query 16838 TTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGG 16895 ||||| || || || ||| || | | | | |||||| || ||| || | | Sbjct 43898 TTGTCCTGGATCTTGGC--CTTAACATTGTCGATGGTGTCGGAGGACTCGACCTCGAGAG 43955 Query 16896 TGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| || || ||||| || ||||||||||| |||||||| Sbjct 43956 TGATAGTCTTCCCGGTTAGGGTTTTGACAAAGATCTGCAT 43995 >seq1868 Length=298818 Score = 100 bits (110), Expect = 2e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 || || || ||||||||||| |||||||| || || | ||| | ||||||||||| Sbjct 224585 TGGAGGGTTGACTCCTTTTGAATGTTGTAATCAGCTAGGGTACGCCCATCCTCCAATTGC 224526 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCAATTTGC 16852 || || ||| | || |||| || |||||| ||| | ||| || ||||| ||| | Sbjct 224525 TTCCCGGCAAAGATGAGCCTTTGCTGGTCCGGAGGAATGCCTTCCTTGTCCTGAATCTTA 224466 Query 16853 TGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGGTC 16912 |||||| | | | | ||||| | |||| |||| |||||||||||||| ||| Sbjct 224465 GCCTTCACGTTGTCGATGGTGTCCGAGCTCTCCACCTCCAGAGTGATGGTTTTTCCTGTC 224406 Query 16913 AGCGTTTTGACAAAAATCTGCAT 16935 | || || ||||| |||||||| Sbjct 224405 AAGGTCTTAACAAAGATCTGCAT 224383 Score = 87.8 bits (96), Expect = 1e-12 Identities = 149/214 (70%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || || | ||| || ||||||||||| || ||||| |||||||| | ||| | ||| Sbjct 224138 AGGACGAGATGGAGGGTGGACTCCTTCTGAATGTTATAGTCGGCAAGGGTGCGACCATCC 224079 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842 |||||||| ||||| || | || || ||||| || || ||| | || || ||||| Sbjct 224078 TCCAATTGCTTGCCGGCGAAGATCAGACGCTGCTGATCGGGAGGGATACCTTCCTTGTCC 224019 Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 || || || ||| || | | | | |||||| ||| || | |||||||| Sbjct 224018 TGGATCTTGGC--CTTGACGTTGTCGATGGTGTCGGAACTCTCGACCTCGAGGGTGATGG 223961 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 | || ||||| || |||||||| || |||||||| Sbjct 223960 TCTTCCCGGTGAGGGTTTTGACGAAGATCTGCAT 223927 Score = 86.0 bits (94), Expect = 5e-12 Identities = 158/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 16708 CCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGC 16767 ||| || || || | || || | ||| |||||||||||||| || || ||||||||||| Sbjct 223926 CCCACCACGGAGACGGAGGACGAGATGAAGCGTGGACTCCTTCTGGATATTGTAGTCGGC 223867 Query 16768 CATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGG 16827 | ||| |||||||||| || || || || | || | ||||| || || ||| Sbjct 223866 GAGGGTGCGACCGTCCTCCAACTGCTTCCCAGCGAAGATCAAACGCTGCTGATCGGGAGG 223807 Query 16828 CACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCC 16885 | || || ||||| || || || ||| || | | | | |||||| ||| Sbjct 223806 GATACCTTCCTTGTCCTGGATCTTGGC--CTTGACGTTGTCTATGGTGTCGGAACTCTCG 223749 Query 16886 GTTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | ||||||||| || ||||| || |||||||| || |||||||| Sbjct 223748 ACCTCGAGGGTGATGGTCTTCCCGGTGAGGGTTTTGACGAAGATCTGCAT 223699 >seq1025 Length=2429094 Score = 98.7 bits (108), Expect = 8e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 16708 CCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGC 16767 ||||||||| | | ||| |||| |||| || || |||||||| || ||||| ||||| Sbjct 1182372 CCCTCCTCGCAAACGCAGCACCAAGTGCAAAGTCGATTCCTTTTGAATATTGTAATCGGC 1182313 Query 16768 CATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGG 16827 | ||| | ||||| || || ||||| ||| |||| | || ||| ||||| || Sbjct 1182312 TAAGGTCCGTCCATCCTCTAACTGCTTGCCAGCAAAAATCAACCTCTGCTGGTCTGGTGG 1182253 Query 16828 CACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGT 16887 | || |||||||| ||| | |||||| | | | || ||| | ||| Sbjct 1182252 GATACCTTCTTTGTCTTGAATCTTAGCCTTCACATTATCAATGGTATCGGAGCTCTCAAC 1182193 Query 16888 TTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936 |||| || ||||||||||| |||| || |||||||||||||||||| Sbjct 1182192 CTCCAAAGTAATGGTTTTTCCAGTCAAGGTCTTGACAAAAATCTGCATT 1182144 Score = 89.7 bits (98), Expect = 4e-13 Identities = 160/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 16708 CCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGC 16767 ||| || || || | ||| |||| ||| || || |||||||| || || ||||| || || Sbjct 1182600 CCCACCACGCAGGCGCAGCACCAGATGAAGGGTAGACTCCTTCTGAATATTGTAATCTGC 1182541 Query 16768 CATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGG 16827 | || | |||| || | || ||||| ||| | ||||||| || || || || Sbjct 1182540 AAGAGTCCTCCCGTCTTCAAGCTGCTTGCCTGCAAAGATAAGCCTTTGCTGATCTGGTGG 1182481 Query 16828 CACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTC-CG 16886 | || |||||||| ||| | | ||| || | | | | ||||| || ||| || Sbjct 1182480 AATACCTTCTTTGTCCTGAATCTTCGCCTTGACATTGTCAATTGTGTC--CGAACTCTCG 1182423 Query 16887 TT-TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| || ||||||||||||||||| || || |||||||||||||| Sbjct 1182422 ACCTCCAATGTAATGGTTTTTCCGGTCAGAGTCTTCACAAAAATCTGCAT 1182373 >seq1014 Length=2264649 Score = 96.9 bits (106), Expect = 3e-15 Identities = 163/232 (70%), Gaps = 8/232 (3%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || |||| || |||| |||| ||||||||||| || ||||| ||||| || Sbjct 109277 CCACCACGCAGCCGAAGCACCAAGTGCAAGGTGGACTCCTTCTGAATGTTATAGTCAGCA 109218 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | | || || | ||| || || ||| |||| | || ||| ||||| || Sbjct 109217 AGAGTCCTTCCATCTTCTAGTTGCTTCCCAGCAAAAATCAACCTCTGCTGGTCTGGTGGG 109158 Query 16829 ACGCCCTCTTTGTCGGCAA--TTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGC--TC 16884 | ||||| ||||| || ||||| |||||| | | | | ||| | ||| || || Sbjct 109157 ATTCCCTCCTTGTCCTGAATCTTTGC--CTTCACATTGTCTATAGTAT--CCGAGCTTTC 109102 Query 16885 CGTTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936 ||||| ||| || |||||||| |||||||| || |||||||| |||||| Sbjct 109101 AACTTCCAAGGTTATAGTTTTTCCTGTCAGCGTCTTCACAAAAATTTGCATT 109050 Score = 84.2 bits (92), Expect = 2e-11 Identities = 147/214 (69%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 16723 CAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTC 16782 ||| |||| ||||| || || |||||||| || ||||| || || | ||| | | || Sbjct 109491 CAGCACCAAGTGCAGTGTCGATTCCTTTTGGATATTGTAATCTGCTAAGGTCCTTCCATC 109432 Query 16783 CTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC 16842 || || || ||||| ||| |||| | || ||| ||||| || | || |||||||| Sbjct 109431 TTCTAACTGCTTGCCAGCAAAAATCAACCTCTGCTGGTCAGGTGGGATACCTTCTTTGTC 109372 Query 16843 GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGT 16902 ||||| |||||| | | | ||| ||| ||| |||| || ||||| Sbjct 109371 TTGAATTTTAGCCTTCACATTATCAATAGTATCGGAACTCTCAACCTCCAAAGTAATGGT 109312 Query 16903 TTTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936 |||||| |||| || || || |||||||||||| Sbjct 109311 TTTTCCAGTCAAGGTCTTAACGAAAATCTGCATT 109278 >seq45900 Length=1264 Score = 91.5 bits (100), Expect = 1e-13 Identities = 161/233 (69%), Gaps = 4/233 (2%) Strand=Plus/Minus Query 16708 CCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGC 16767 ||| || || || | || || | ||| |||||||||||||| || || ||||||||||| Sbjct 524 CCCACCACGGAGACGGAGGACGAGATGGAGCGTGGACTCCTTCTGAATATTGTAGTCGGC 465 Query 16768 CATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGG 16827 | ||| |||||||||| || || || || | || | ||||| || ||| ||| Sbjct 464 AAGGGTGCGACCGTCCTCCAACTGCTTCCCGGCGAAGATCAAACGCTGCTGATCCGGAGG 405 Query 16828 CACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCC 16885 | || || ||||| || || || ||| || | | | | |||||| | ||| Sbjct 404 AATACCTTCCTTGTCCTGGATCTTGGC--CTTAACGTTGTCAATGGTGTCGGAGCTCTCG 347 Query 16886 GTTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTT 16938 || | |||||||| || ||||| || |||||||| || |||||||| || Sbjct 346 ACCTCGAGAGTGATGGTCTTGCCGGTGAGGGTTTTGACGAAGATCTGCATGTT 294 >seq55116 Length=591887 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| || || || |||||||| || || || || || |||| ||| | | ||| Sbjct 230214 AGAACCAGGTGGAGTGTAGACTCCTTCTGAATATTATAATCAGCCAAAGTTCGGCCATCC 230273 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843 || | || || |||||| |||| |||| ||| || || || | || |||||||| Sbjct 230274 TCGAGCTGCTTTCCCGCAAAAATCAGCCTCTGCTGATCTGGGGGAATTCCTTCTTTGTCC 230333 Query 16844 GCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTT 16903 ||||| |||||| | | | |||||| ||| ||| | || || || Sbjct 230334 TGAATTTTTGCCTTCACGTTATCAATGGTGTCGGAACTCTCAACTTCAAGAGTAATAGTC 230393 Query 16904 TTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||||||| ||||||||||||||||||||||| Sbjct 230394 TTTCCGGTGAGCGTTTTGACAAAAATCTGCAT 230425 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 404565649530970