Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Juglans_20regia_20[refseq_20GCF_5F001411555.1_202015-10-22] 105,803 sequences; 699,672,627 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq50617 145 1e-29 seq1761 102 1e-16 seq1889 91.5 2e-13 >seq50617 Length=115889 Score = 145 bits (160), Expect = 1e-29 Identities = 383/579 (66%), Gaps = 8/579 (1%) Strand=Plus/Minus Query 32661 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 32720 || ||||| ||||| || || |||||||| | || | |||||||| || ||||| Sbjct 92430 CACGCGAAGTCGCAATGCAGCCCCTCGTCACGGGAGATCAGCTCGTTGGAGAAGGTGAGA 92371 Query 32721 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCAGAAAAGAA 32779 || ||||| | || |||||||| | ||| ||||||| |||| | | | || || ||||| Sbjct 92370 CCAGGCATCAACCCGCGCTTTTTCAACCAGAATATGG-CGCAGAAGCTTCCGGAGAAGAA 92312 Query 32780 AATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATA--AC-CGGCGCTGTCATG 32836 || ||||| || ||| ||||| || || | ||| || | || | | || ||| Sbjct 92311 GATCCCTTCGACGCACGCGAAGGCGATGAGACGCTCCGCAAAGGACTCCGAGCCGTCG-- 92254 Query 32837 TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATT 32896 ||||| | ||||| | ||||||||| ||||| || | ||||| || |||| Sbjct 92253 -ATCCAGCGCAGGGCCCACTGGGCCTTCTTAGCCACACAGGGGACGGTCTCGATGGCATG 92195 Query 32897 AAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACAT 32956 ||||| || || |||| ||| || | || || || | ||| ||||||||||| Sbjct 92194 GAAGAGGCGGTGCTTCTCATCTGAATCCTTGATGTAGGTCTCCAGCAACAGACTATACAT 92135 Query 32957 TTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAAT 33016 || || ||||| ||||| ||||| || || || ||||||||| | ||||||| || Sbjct 92134 CTCGGAGTGAATATTTTCGATGGCAATCTGGAAGCCGTAGAAGGCGCGGGCCTCGGCAAC 92075 Query 33017 CTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGC 33076 ||| || || | || | | || | || || || || || || ||||| Sbjct 92074 CTGGACCTCCTTCATGAACCTCCCAGCGAGGTTCTCCAAAACGATGCCATCTGAAGCTGC 92015 Query 33077 AAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATC 33136 ||| || || | || || ||||| | ||| ||||| || || || | ||| | Sbjct 92014 AAAGAAAGCTAGGACGTGGGAAATAAAGTGTTTCTCGTCGGGGGTGAGGGCTTCCCATTG 91955 Query 33137 ATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTT 33196 || || | ||| | || || || || | ||||| || || ||||| || || || Sbjct 91954 GCGGAGGTCCTGAGAGAGGTCAACCTCCTCGGCAGTCCAGAAAGAGGCCTCGGCTTTCTT 91895 Query 33197 ATACATATTCCAGATGTCATGATATTGAATTGGAAAAAT 33235 ||||| | ||| || || | || || || ||||| || Sbjct 91894 GTACATCTCCCATATTTCGGGGTACTGGATCGGAAACAT 91856 >seq1761 Length=289715 Score = 102 bits (112), Expect = 1e-16 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 63466 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATT 63525 ||| || |||||||| | ||| ||||| || ||||| ||||| | ||| | | || Sbjct 164710 AGTCCCTGCATTAAAAAGGGTGGGAGACGCATGAGTGAACCACCGCTGAGACATCATATG 164769 Query 63526 GTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAA 63585 ||| || | ||||| || || || || | |||||||| || || || | ||| || Sbjct 164770 GTATGTTTTGATAGCAGAATCAATGTCATTCTTGTGAATTCCAACAGCAACCCTCATCAA 164829 Query 63586 CATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAA 63645 |||||| ||||||||||| || | ||| | | ||||| | ||||||| | || | Sbjct 164830 CATGTGTTGAGGTCTTTCTACAACCTTTCCTTGGACCTTCAATAGGTAGGATCTCTCAAG 164889 Query 63646 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAAC 63696 ||||| |||||||| || | || ||||||||| || || || || || Sbjct 164890 GGTTTTGAAACCAAAGTAATCATAGTCAAAGTCTCGATCATAGATGATCAC 164940 >seq1889 Length=778003 Score = 91.5 bits (100), Expect = 2e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 63466 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATT 63525 |||||| |||||||| | |||||| | ||| ||||| ||||| | ||| | | || Sbjct 333828 AGTTCCTGCATTAAAAAGGGTAGGGGTAGCATGAGTGAACCAACGCTGAGACATCAAATG 333887 Query 63526 GTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAA 63585 ||| |||| || | | ||||| || || || || || || || || || | |||||| Sbjct 333888 GTATGTCTTAAGAACAGAGTCCATGTCATCTTTGTGGATACCAACAGCAACTCTCATTAA 333947 Query 63586 CATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAA 63645 |||||||||||| ||||| || | ||| | | || || | || || | || | Sbjct 333948 CATGTGCTGAGGCCTTTCCACAACCTTCCCATCAACCTTTAAAAGATATGACCTCTCAAG 334007 Query 63646 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTC 63680 |||||| || |||||||| | ||| ||| |||| Sbjct 334008 AGTTTTGAAGCCAAAATAATCGTAGTCAAAATCTC 334042 Score = 82.4 bits (90), Expect = 1e-10 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 62210 AATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAA 62269 || ||||| ||||||||||| || |||||| ||||| | | ||||||| ||||| | | Sbjct 331196 AAAACTCTGCGAGTGTAAATGTTGGAGGTATAAGGTTCAAAACACTCATTGTTTCCAAGA 331255 Query 62270 ATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCAC 62304 || ||| ||||| ||||| ||||||||||| || Sbjct 331256 ATCTGACTGGTTGAAGCAGTGGGCATAGGTGCTAC 331290 Score = 82.4 bits (90), Expect = 1e-10 Identities = 108/150 (72%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 62970 TTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAGTCCAGGAC 63029 |||| ||| | || ||||| || || || ||||||||| || ||| || ||| Sbjct 332904 TTTCATATTGGGTGTACAAATTGTCAAATTCTTCTCCCCAATAATCAGCCAAACCGGGAG 332963 Query 63030 ATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGAT 63089 |||| || || | ||| ||||| | ||| ||| | ||||| || ||||||||| | Sbjct 332964 CCTCATTTGGGCAAAACAAAGACCATTGTCCATCACCTCGCACTCTTTCCATAAAGAGGT 333023 Query 63090 CAGGAATCCAAAGAGCTATAAATAGATCTC 63119 |||| ||||||||||| ||||||||||| Sbjct 333024 CAGGTATCCAAAGAGCATAAAATAGATCTC 333053 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 632793997918800