Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Juglans_20regia_20[refseq_20GCF_5F001411555.1_202015-10-22] 105,803 sequences; 699,672,627 total letters Query= NC_008296.2 Length=177300 Score E Sequences producing significant alignments: (Bits) Value seq1861 370 1e-97 seq47040 141 1e-28 seq54963 131 2e-25 >seq1861 Length=68153 Score = 370 bits (410), Expect = 1e-97 Identities = 676/981 (69%), Gaps = 24/981 (2%) Strand=Plus/Plus Query 167300 TTTGATGTCCTGGATGACTGGCTTAAACGCGACCGCTTTGTCTTTGTGGGCTGGTCTGGA 167359 |||||| | ||||||||||| | | |||| || || ||||| || ||||| || Sbjct 26949 TTTGATATTATGGATGACTGGTTACGGAGGGACCATTTCGTTTTTGTAGGTTGGTCCGGT 27008 Query 167360 TTACTTCTTTTTCCCACTGCTTATCTGGCAATTGGTGGCTGGCTTACTGGCACGACGTTT 167419 || | || ||||| ||| ||| | || | || || ||| |||| || || || ||| Sbjct 27009 CTATTACTCTTTCCTTGTGCCTATTTTGCCTTAGGGGGTTGGTTTACAGGTACAACCTTT 27068 Query 167420 GTTACGAGCTGGTATACCCACGGGTTGGCGTCTAGTTACC--TTG--AGGGTGCTAATTT 167475 || || | |||||| ||||| |||||| |||| | ||| ||| ||| | || Sbjct 27069 GTAACTTCATAGTATACACACGGATTGGCG---AGTTCCTATTTGGAAGGCTGCAACTTC 27125 Query 167476 TCTCACGGCAGCAGTGTCAACTCCTGCTGACGCTATGGGTCATTCTCTTCTTCTACTTTG 167535 | | || || ||||| || |||| ||| | | | | || ||| | | |||| || Sbjct 27126 T-TAACCGCTGCAGTTTCTACTCTCGCTAATAGTTTAGCACACTCTTTGTTGTTACTATG 27184 Query 167536 GGGTCCTGAGTCTCAGGGGGATTTCATCAGGTGGTGCCAGCTTGGGGGACTCTGGGCTTT 167595 |||||| || | || || ||||| | | ||||| || | || | || ||| |||| Sbjct 27185 GGGTCCAGAAACACAAGGAGATTTTACTTGTTGGTGTCAATTAGGTAGTCTGTGGACTTT 27244 Query 167596 TGTGGCGCTCCACGGAGCCTTTGCTCTCATAGGATTTATGCTTCGGCAATTTGAGATAAG 167655 ||| || ||| ||| || ||||| | | | | || | ||||| | Sbjct 27245 TGTTGCTCTCT--GGA---------CTAATAGGTCTCACGTTACGTTAGTTTGAACTTGC 27293 Query 167656 TAGACTAGTAGGTATCCGTCCTTACAATGCGATTGCTTTTTCTGGTCCGATTGCTGTCTT 167715 | || || | || ||||| ||||| || || || |||| ||| |||||| | || Sbjct 27294 TCGATCTGTTCAATTGCGACCTTATAATGCAATCGCATTCTCTGCTCCAATTGCTTTTTT 27353 Query 167716 TGTGTCTGTTTTTCTCATCTATCCTCTCGGACAGTCCAGTTGGTTCTTTGCACCGTCGTT 167775 | | | || || || || |||| || || || || |||||||||||| || || Sbjct 27354 TTTTTTGGTATTGCTGATTTATCTACTAGGTCAATCGGGTTGGTTCTTTGTGCCTAGCTT 27413 Query 167776 TGGTGTTGCAGCGATATTTAGATTCCTACTATTC--CTACAGGGTTTCCATAACTGGACG 167833 |||||| ||||| |||||| |||| | || || ||| |||||||| |||| ||||| Sbjct 27414 TGGTGTAGCAGCTATATTTC-ATTCTTTCTCTTTTTCTA-AGGGTTTC-ATAATTGGACA 27470 Query 167834 CTCAACCCTTTCCATATGATGGGAGTTGCTGGTATCCTAGGCGGTGCATTGCTTTCTGCA 167893 | ||||| || ||||||||||| ||||||||| | | |||| ||| |||| | | Sbjct 27471 TTGAACCCATTTCATATGATGGGGGTTGCTGGTGTAATTGGCGCTGCTCTGCTATGCGTT 27530 Query 167894 ATCCATGGTGTTACAGTAGAGAATACTCTGTATGAAGATGGTGAGCAAGCAAACACTTTC 167953 || ||||||| ||| |||| | |||| | | |||||||||||| ||||| || || Sbjct 27531 ATTCATGGTGCTACCTTAGAAAGTACTTTATTTGAAGATGGTGATGGTGCAAATACATTT 27590 Query 167954 AAAGCATTTGATACGACTCAGGAAGAGGAAACTTATTCCATGGTCACTGCTAACCGATTC 168013 || ||| | | ||||| | || ||||||||||| |||||||| ||||||| || Sbjct 27591 TGTGCTTTTAACCCAACTCAAGCTGAAGAAACTTATTCAATGGTCACCGCTAACCACTTT 27650 Query 168014 TGGTCTCAAATTTTTGGTATTGCTTTCAGCAATAAGCGTTGGTTGCACTTCTTTATGCTT 168073 ||||| ||||| ||||| || |||| |||||| |||||||| || ||| ||||||| Sbjct 27651 TGGTCCCAAATCTTTGGGGTTACTTTTTCCAATAAACGTTGGTTACATTTCCTTATGCTA 27710 Query 168074 TTCGTTCCTGTCATGGGACTTTGGACAAGTTCTATTGGTATCATCGGTCTCGCACTTAAT 168133 || || | || | | | |||| ||| || |||| | ||||||| || || || Sbjct 27711 TTTGTACTAGTAACCAGTTTATGGATGAGTGCTCTTGGAGTAGTCGGTCTGGCTCTGAAC 27770 Query 168134 CTTCGTGCTTATGACTTTGTGTCTCAGGAAGTTAGAGCAGCAGAGGATCCAGAGTTTGAA 168193 || ||||| ||||||||||| ||||||||| | | |||| ||| ||||| || ||||| Sbjct 27771 CTACGTGCCTATGACTTTGTTTCTCAGGAAATCCGTGCAGTAGAAGATCCTGAATTTGAG 27830 Query 168194 ACTTTCTATACGAAAAACATCCTCCTCAATGAAGGACTCCGTGCCTGGATGGCTCCAGTA 168253 |||||||| || ||||| || || | |||||||| | | ||| ||||||| | | Sbjct 27831 ACTTTCTACACAAAAAATATTCTTTTAAATGAAGGTATTCATGCTTGGATGGAGGCTCAA 27890 Query 168254 GACCAACCACATGAAAACTTT 168274 || || || |||||||||||| Sbjct 27891 GATCAGCCTCATGAAAACTTT 27911 >seq47040 Length=8764 Score = 141 bits (156), Expect = 1e-28 Identities = 146/191 (76%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 166438 GTAGCATACTCTGCACCTGTTGCAGCAGCATCCGCAGTCTTCCTGGTCTATCCTTTCGGT 166497 || ||||| || || ||||||||||| || | | || ||| || ||||||| | ||| Sbjct 5687 GTTGCATATTCAGCTCCTGTTGCAGCTGCTACTACTGTTTTCTTGATCTATCCAATTGGT 5628 Query 166498 CAAGGTTCTTTCTCTGACGCAATGCCCCTGGGTATCAGTGGCACCTTCAACTACATGCTT 166557 ||||| || ||| ||| | ||| || || || ||| || ||||||| |||| || Sbjct 5627 CAAGGAAGCTTTTCTCACGGTAAGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATT 5568 Query 166558 GTCTTCCAAGCAGAGCACAACATCCTCATGCACCCCTTCCATATGCTGGGTGTAGCAGGT 166617 || ||||| || |||||||||||||| |||||||| || |||||| | |||||||| ||| Sbjct 5567 GTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCATATGTTAGGTGTAGCTGGT 5508 Query 166618 GTATTCGGTGG 166628 |||||||| || Sbjct 5507 GTATTCGGCGG 5497 >seq54963 Length=251348 Score = 131 bits (144), Expect = 2e-25 Identities = 149/200 (75%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 166438 GTAGCATACTCTGCACCTGTTGCAGCAGCATCCGCAGTCTTCCTGGTCTATCCTTTCGGT 166497 || ||||| || || ||||||| ||| || | || || || || ||||||| | ||| Sbjct 117193 GTTGCATATTCAGCTCCTGTTGTAGCTGCTACTGCTGTTTTATTGATCTATCCAATTGGT 117252 Query 166498 CAAGGTTCTTTCTCTGACGCAATGCCCCTGGGTATCAGTGGCACCTTCAACTACATGCTT 166557 ||||| || ||||||| ||||| || || || ||| || ||||||| |||| || Sbjct 117253 CAAGGAAGCTTTTCTGACGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATT 117312 Query 166558 GTCTTCCAAGCAGAGCACAACATCCTCATGCACCCCTTCCATATGCTGGGTGTAGCAGGT 166617 || ||||| || |||||||||||||| |||||||| || || ||| | ||||| ||| Sbjct 117313 GTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTACGTGTAATTGGT 117372 Query 166618 GTATTCGGTGGGTCACTTTT 166637 |||||||| || || || || Sbjct 117373 GTATTCGGCGGCTCCCTATT 117392 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 566481814408800