Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Juglans_20regia_20[refseq_20GCF_5F001411555.1_202015-10-22] 105,803 sequences; 699,672,627 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq55328 93.3 5e-14 seq47615 93.3 5e-14 seq5772 93.3 5e-14 seq50360 91.5 2e-13 seq2001 91.5 2e-13 seq55730 89.7 6e-13 seq55405 89.7 6e-13 seq1487 89.7 6e-13 seq55622 87.8 2e-12 seq55236 87.8 2e-12 seq51885 87.8 2e-12 seq54989 86.0 7e-12 seq54522 86.0 7e-12 seq2421 86.0 7e-12 seq1234 86.0 7e-12 seq55459 82.4 8e-11 seq1552 82.4 8e-11 seq1091 82.4 8e-11 >seq55328 Length=12202 Score = 93.3 bits (102), Expect = 5e-14 Identities = 77/92 (84%), Gaps = 3/92 (3%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322 ||||||| ||||||||||||||||||||||||| | ||| |||||||| | | |||| Sbjct 12196 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTTCTCGTGAGAGAGC 12137 Query 126323 GTGGGTTCGAACCCCACACCTGACAAATTATT 126354 |||||||| || ||||| ||||| ||||||| Sbjct 12136 GTGGGTTCAAATCCCACTTCTGAC-AATTATT 12106 >seq47615 Length=12347 Score = 93.3 bits (102), Expect = 5e-14 Identities = 77/92 (84%), Gaps = 3/92 (3%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322 ||||||| ||||||||||||||||||||||||| | ||| |||||||| | | |||| Sbjct 5413 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTTCTCGTGAGAGAGC 5354 Query 126323 GTGGGTTCGAACCCCACACCTGACAAATTATT 126354 |||||||| || ||||| ||||| ||||||| Sbjct 5353 GTGGGTTCAAATCCCACTTCTGAC-AATTATT 5323 >seq5772 Length=9121 Score = 93.3 bits (102), Expect = 5e-14 Identities = 77/92 (84%), Gaps = 3/92 (3%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322 ||||||| ||||||||||||||||||||||||| | ||| |||||||| | | |||| Sbjct 3709 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTTCTCGTGAGAGAGC 3768 Query 126323 GTGGGTTCGAACCCCACACCTGACAAATTATT 126354 |||||||| || ||||| ||||| ||||||| Sbjct 3769 GTGGGTTCAAATCCCACTTCTGAC-AATTATT 3799 >seq50360 Length=4697 Score = 91.5 bits (100), Expect = 2e-13 Identities = 73/87 (84%), Gaps = 2/87 (2%) Strand=Plus/Minus Query 126264 CAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAG 126321 |||||||| ||||||||||||||||||||||||| | ||| |||||| | || || | | Sbjct 4095 CAGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTAACGAGGG 4036 Query 126322 CGTGGGTTCGAACCCCACACCTGACAA 126348 ||||||||| || ||||| ||||||| Sbjct 4035 CGTGGGTTCAAATCCCACTTCTGACAA 4009 >seq2001 Length=71380 Score = 91.5 bits (100), Expect = 2e-13 Identities = 73/87 (84%), Gaps = 2/87 (2%) Strand=Plus/Plus Query 126264 CAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAG 126321 |||||||| ||||||||||||||||||||||||| | ||| |||||| | || || | | Sbjct 1235 CAGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTAACGAGGG 1294 Query 126322 CGTGGGTTCGAACCCCACACCTGACAA 126348 ||||||||| || ||||| ||||||| Sbjct 1295 CGTGGGTTCAAATCCCACTTCTGACAA 1321 >seq55730 Length=1817490 Score = 89.7 bits (98), Expect = 6e-13 Identities = 85/106 (80%), Gaps = 7/106 (7%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA---- 126320 ||||||| ||||||||||||||||||||||||| | ||| |||||| | ||| || Sbjct 247419 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CTTCGAGAGAGG 247362 Query 126321 GCGTGGGTTCGAACCCCACACCTGACAAAT-TATTATTGGAATTTT 126365 |||||||||| || ||||| |||||| | |||| |||||| ||| Sbjct 247361 GCGTGGGTTCAAATCCCACTTCTGACATTTATATTTTTGGAAGTTT 247316 >seq55405 Length=1361627 Score = 89.7 bits (98), Expect = 6e-13 Identities = 72/86 (84%), Gaps = 2/86 (2%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGC 126322 ||||||| ||||||||||||||||||||||||| | ||| |||||| | || || | || Sbjct 997561 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTAACGAGGGC 997502 Query 126323 GTGGGTTCGAACCCCACACCTGACAA 126348 |||||||| || ||||| ||||||| Sbjct 997501 GTGGGTTCAAATCCCACTTCTGACAA 997476 >seq1487 Length=1925788 Score = 89.7 bits (98), Expect = 6e-13 Identities = 74/89 (83%), Gaps = 6/89 (7%) Strand=Plus/Plus Query 126263 ACAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA-- 126320 ||||||||| ||||||||||||||||||||||||| | ||| |||||| ||||| || Sbjct 313983 ACAGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTGAGA 314040 Query 126321 --GCGTGGGTTCGAACCCCACACCTGACA 126347 |||||||||| || ||||| |||||| Sbjct 314041 GGGCGTGGGTTCAAATCCCACTTCTGACA 314069 >seq55622 Length=839323 Score = 87.8 bits (96), Expect = 2e-12 Identities = 74/90 (82%), Gaps = 6/90 (7%) Strand=Plus/Minus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA----G 126321 |||||| ||||||||||||||||||||||||| | ||| |||||| ||||| || | Sbjct 456027 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTGAGAGGG 455970 Query 126322 CGTGGGTTCGAACCCCACACCTGACAAATT 126351 ||||||||| || ||||| ||||||| || Sbjct 455969 CGTGGGTTCAAATCCCACTTCTGACAAGTT 455940 >seq55236 Length=705870 Score = 87.8 bits (96), Expect = 2e-12 Identities = 77/95 (81%), Gaps = 6/95 (6%) Strand=Plus/Plus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA----G 126321 |||||| ||||||||||||||||||||||||| | ||| |||||| ||||| || | Sbjct 324241 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTGAGAGGG 324298 Query 126322 CGTGGGTTCGAACCCCACACCTGACAAATTATTAT 126356 ||||||||| || ||||| |||||| || | ||| Sbjct 324299 CGTGGGTTCAAATCCCACTTCTGACACATCAATAT 324333 >seq51885 Length=69652 Score = 87.8 bits (96), Expect = 2e-12 Identities = 72/87 (83%), Gaps = 2/87 (2%) Strand=Plus/Minus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| |||||||||||||||||||||||||||||| | |||||| || | ||||||| Sbjct 20766 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 20709 Query 126328 TTCGAACCCCACACCTGACAAATTATT 126354 ||| || |||||| ||| |||||| || Sbjct 20708 TTCAAATCCCACAGCTGTCAAATTTTT 20682 >seq54989 Length=758796 Score = 86.0 bits (94), Expect = 7e-12 Identities = 73/89 (82%), Gaps = 6/89 (7%) Strand=Plus/Minus Query 126263 ACAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTC----GG 126318 ||||||||| ||||||||||||||||||||||||| | ||| |||||| |||| | Sbjct 219526 ACAGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTAAGA 219469 Query 126319 GAGCGTGGGTTCGAACCCCACACCTGACA 126347 | |||||||||| || ||||| |||||| Sbjct 219468 GGGCGTGGGTTCAAATCCCACTTCTGACA 219440 >seq54522 Length=197813 Score = 86.0 bits (94), Expect = 7e-12 Identities = 81/102 (79%), Gaps = 5/102 (5%) Strand=Plus/Plus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| |||||||||||||||||||||||||||||| | |||||| || | ||||||| Sbjct 4143 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 4200 Query 126328 TTCGAACCCCACACCTGACAAA---TTATTATTGGAATTTTT 126366 ||| || |||||| ||| |||| || ||||| |||||| Sbjct 4201 TTCAAATCCCACAGCTGTCAAATGTTTTTTATTTTTATTTTT 4242 >seq2421 Length=8193 Score = 86.0 bits (94), Expect = 7e-12 Identities = 73/89 (82%), Gaps = 6/89 (7%) Strand=Plus/Plus Query 126263 ACAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA-- 126320 ||||||||| ||||||||||||||||||||||||| | ||| |||||| | ||| || Sbjct 7848 ACAGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CTTCGAGAGA 7905 Query 126321 --GCGTGGGTTCGAACCCCACACCTGACA 126347 |||||||||| || ||||| |||||| Sbjct 7906 GGGCGTGGGTTCAAATCCCACTTCTGACA 7934 >seq1234 Length=109023 Score = 86.0 bits (94), Expect = 7e-12 Identities = 73/89 (82%), Gaps = 6/89 (7%) Strand=Plus/Minus Query 126263 ACAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA-- 126320 ||||||||| ||||||||||||||||||||||||| | ||| |||||| | ||| || Sbjct 54061 ACAGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CTTCGAGAGA 54004 Query 126321 --GCGTGGGTTCGAACCCCACACCTGACA 126347 |||||||||| || ||||| |||||| Sbjct 54003 GGGCGTGGGTTCAAATCCCACTTCTGACA 53975 >seq55459 Length=81695 Score = 82.4 bits (90), Expect = 8e-11 Identities = 74/91 (81%), Gaps = 3/91 (3%) Strand=Plus/Plus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| |||||||||||||||||||||||||||||| | |||||| || | ||||||| Sbjct 70267 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 70324 Query 126328 TTCGAACCCCACACCTGACAAAT-TATTATT 126357 ||| || |||||| ||| ||| | |||| || Sbjct 70325 TTCAAATCCCACAGCTGTCAATTGTATTTTT 70355 >seq1552 Length=2245142 Score = 82.4 bits (90), Expect = 8e-11 Identities = 68/82 (83%), Gaps = 2/82 (2%) Strand=Plus/Plus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| |||||||||||||||||||||||||||||| | |||||| || | ||||||| Sbjct 1056735 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 1056792 Query 126328 TTCGAACCCCACACCTGACAAA 126349 ||| || |||||| ||| |||| Sbjct 1056793 TTCAAATCCCACAGCTGTCAAA 1056814 >seq1091 Length=664619 Score = 82.4 bits (90), Expect = 8e-11 Identities = 74/91 (81%), Gaps = 3/91 (3%) Strand=Plus/Minus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| |||||||||||||||||||||||||||||| | |||||| || | ||||||| Sbjct 170135 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 170078 Query 126328 TTCGAACCCCACACCTGACAAAT-TATTATT 126357 ||| || |||||| ||| ||| | |||| || Sbjct 170077 TTCAAATCCCACAGCTGTCAATTGTATTTTT 170047 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556124330709720