Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Juglans_20regia_20[refseq_20GCF_5F001411555.1_202015-10-22] 105,803 sequences; 699,672,627 total letters Query= NC_008520.2 Length=132239 Score E Sequences producing significant alignments: (Bits) Value seq55116 96.9 3e-15 seq1025 95.1 1e-14 seq1014 91.5 1e-13 >seq55116 Length=591887 Score = 96.9 bits (106), Expect = 3e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 ||||| ||||||||||||||| | ||||| || || ||||| | ||| || | Sbjct 230425 ATGCAGATTTTTGTCAAAACGCTCACCGGAAAGACTATTACTCTTGAAGTTGAGAGTTCC 230366 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 || | ||| | || || ||||||| ||||||||||| ||||| ||||| Sbjct 230365 GACACCATTGATAACGTGAAGGCAAAAATTCAGGACAAAGAAGGAATTCCCCCAGATCAG 230306 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 || ||||| |||| |||||| || || | || ||| |||| |||| ||||||||| Sbjct 230305 CAGAGGCTGATTTTTGCGGGAAAGCAGCTCGAGGATGGCCGAACTTTGGCTGATTATAAT 230246 Query 111367 ATACAAAAAGAATCTACACTACA 111389 || || || || |||||||| || Sbjct 230245 ATTCAGAAGGAGTCTACACTCCA 230223 >seq1025 Length=2429094 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 ||||| |||||||| || || ||||||| ||||||||||| |||| || Sbjct 1182373 ATGCAGATTTTTGTGAAGACTCTGACCGGAAAAACCATTACATTGGAGGTCGAGAGTTCG 1182432 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 || | ||| | | || || || ||| ||||||||||| |||| ||||| Sbjct 1182433 GACACAATTGACAATGTCAAGGCGAAGATTCAGGACAAAGAAGGTATTCCACCAGATCAG 1182492 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 ||||||||||| | ||| ||||| || | ||||| | ||| | || ||||| ||| Sbjct 1182493 CAAAGGCTTATCTTTGCAGGCAAGCAGCTTGAAGACGGGAGGACTCTTGCAGATTACAAT 1182552 Query 111367 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 || || || || ||||| || ||| | ||| |||| ||||| ||||| Sbjct 1182553 ATTCAGAAGGAGTCTACCCTTCATCTGGTGCTGCGCCTGCGTGGTGG 1182599 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 111186 AATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAG 111245 |||||| ||||||||||| || |||| || ||||||||||| |||| || | Sbjct 1182144 AATGCAGATTTTTGTCAAGACCTTGACTGGAAAAACCATTACTTTGGAGGTTGAGAGCTC 1182203 Query 111246 CGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCA 111305 |||| | ||| | || || || ||| ||||||||||| | || || || Sbjct 1182204 CGATACCATTGATAATGTGAAGGCTAAGATTCAAGACAAAGAAGGTATCCCACCAGACCA 1182263 Query 111306 ACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 111365 || ||| | |||| ||| ||||| || || || ||| || | |||||||| || Sbjct 1182264 GCAGAGGTTGATTTTTGCTGGCAAGCAGTTAGAGGATGGACGGACCTTAGCCGATTACAA 1182323 Query 111366 TATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 ||| ||||| ||||| || | || || ||| ||||| |||| || || Sbjct 1182324 TATTCAAAAGGAATCGACTTTGCACTTGGTGCTGCGTTTGCGAGGAGG 1182371 >seq1014 Length=2264649 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 111186 AATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAG 111245 |||||| ||||| || || || |||| || ||||||||||| |||| || Sbjct 109278 AATGCAGATTTTCGTTAAGACCTTGACTGGAAAAACCATTACTTTGGAGGTTGAGAGTTC 109337 Query 111246 CGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCA 111305 |||| || ||| | || || |||||| ||||||||||| | || || || Sbjct 109338 CGATACTATTGATAATGTGAAGGCTAAAATTCAAGACAAAGAAGGTATCCCACCTGACCA 109397 Query 111306 ACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 111365 || ||| | |||| ||| ||||| || || |||||| | || | || ||||| || Sbjct 109398 GCAGAGGTTGATTTTTGCTGGCAAGCAGTTAGAAGATGGAAGGACCTTAGCAGATTACAA 109457 Query 111366 TATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 ||| ||||| ||||| ||||| || || ||| ||||| |||| || || Sbjct 109458 TATCCAAAAGGAATCGACACTGCACTTGGTGCTGCGTTTGCGTGGCGG 109505 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 111186 AATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAG 111245 |||||| |||||||| || || |||| || |||||||| || | || ||| Sbjct 109506 AATGCAGATTTTTGTGAAGACTTTGACTGGTAAAACCATAACTCTCGAGGTTGAAAGTTC 109565 Query 111246 CGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCA 111305 ||| | | | | | || || ||| || |||||||| ||| | || || || Sbjct 109566 GGATACAATCGACAATGTCAAGGCAAAGATACAGGACAAAGAGGGCATCCCTCCAGACCA 109625 Query 111306 ACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 111365 ||||||||||| | ||| ||||| || | |||||| | ||| | || ||||| || Sbjct 109626 GCAAAGGCTTATCTTTGCAGGCAAGCAGCTAGAAGATGGGAGGACTCTTGCAGATTACAA 109685 Query 111366 TATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 ||| || || |||||||| |||||| | ||| |||| |||| ||||| Sbjct 109686 TATTCAGAAGGAATCTACCCTACATCTGGTGCTGCGCTTGCGTGGTGG 109733 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422494500892600