Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Juglans_20regia_20[refseq_20GCF_5F001411555.1_202015-10-22] 105,803 sequences; 699,672,627 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq1020 136 8e-27 seq52220 93.3 9e-14 seq47135 91.5 3e-13 seq925 91.5 3e-13 seq54950 89.7 1e-12 seq53059 89.7 1e-12 seq25457 89.7 1e-12 seq55754 87.8 4e-12 seq55646 87.8 4e-12 seq55593 87.8 4e-12 seq2030 87.8 4e-12 seq1800 87.8 4e-12 seq1576 87.8 4e-12 seq1371 87.8 4e-12 seq1274 87.8 4e-12 seq983 87.8 4e-12 seq978 87.8 4e-12 seq1465 86.0 1e-11 >seq1020 Length=2927469 Score = 136 bits (150), Expect = 8e-27 Identities = 201/285 (71%), Gaps = 0/285 (0%) Strand=Plus/Minus Query 218517 TGACTTCATCGACAAGGAGCTCATTCTTTTCTCGCGGTATGATGTGGAGCGTTCTATTCC 218576 |||||| || |||||||||| || | || ||| | ||| | | | |||||||| Sbjct 402390 TGACTTTGTCAACAAGGAGCTTATATTGTTTTCGATGGCGGATCTTCAAAGGTCTATTCC 402331 Query 218577 CAGCGTGGTGGATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGCCGCATTCAAGCG 218636 |||| |||||||| || || || | ||||| || || | | |||||| | Sbjct 402330 TTCGATGGTTGATGGCCTGAAACCGGGCCAAAGGAAGATTCTTTTCTGCTCTTTCAAGAG 402271 Query 218637 GAACCTGGTTCAAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATTTCTGG 218696 |||| | || | ||| || ||||| ||||||||||||||||| || ||| ||| | Sbjct 402270 GAACTTTGTCAAGGAAGCAAAAGTCGCCCAGTTTTCTGGTTATGTGTCTGAACATTCAGC 402211 Query 218697 CTACCATCACGGTGAGCAGAGTCTGCAGGGTGCCATTGTAGGCATGGCACAGGACTATGT 218756 || ||||| || |||||||| || | || |||| | || |||||||| |||||||| Sbjct 402210 TTATCATCATGGCGAGCAGAGCCTTGCGAGTACCATCATTGGAATGGCACAAGACTATGT 402151 Query 218757 GGGCAGTAACAACATGAACTTGCTGCTCCCCAACGGTCAGTTTGG 218801 |||||| |||||||| || | || | || || || |||||||| Sbjct 402150 GGGCAGCAACAACATTAATCTTCTTCAACCGAATGGCCAGTTTGG 402106 >seq52220 Length=53913 Score = 93.3 bits (102), Expect = 9e-14 Identities = 60/66 (91%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| || ||||||| || ||||||||||||||||| Sbjct 25588 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 25647 Query 142563 CCCCAC 142568 |||||| Sbjct 25648 CCCCAC 25653 >seq47135 Length=4229 Score = 91.5 bits (100), Expect = 3e-13 Identities = 62/70 (89%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 142499 AGATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTT 142558 ||| |||||| |||||||| ||||||||||| || ||||||| || ||||||||||||| Sbjct 2473 AGAAAGCCCGTCTAGCTCAGCCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTT 2414 Query 142559 CGAGCCCCAC 142568 |||||||||| Sbjct 2413 CGAGCCCCAC 2404 >seq925 Length=58640 Score = 91.5 bits (100), Expect = 3e-13 Identities = 59/65 (91%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||| |||||||||||||||||||| || ||||||| || |||||||||||||||||| Sbjct 19078 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 19137 Query 142564 CCCAC 142568 ||||| Sbjct 19138 CCCAC 19142 >seq54950 Length=699951 Score = 89.7 bits (98), Expect = 1e-12 Identities = 60/67 (90%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 142502 TAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGA 142561 ||||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||| Sbjct 340153 TAGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGA 340212 Query 142562 GCCCCAC 142568 ||||||| Sbjct 340213 GCCCCAC 340219 >seq53059 Length=74765 Score = 89.7 bits (98), Expect = 1e-12 Identities = 60/67 (90%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 142502 TAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGA 142561 ||||||| |||||||| ||||||||||| || ||||||| || |||||||||||||||| Sbjct 32965 TAGCCCGTCTAGCTCAGCCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGA 32906 Query 142562 GCCCCAC 142568 ||||||| Sbjct 32905 GCCCCAC 32899 >seq25457 Length=576 Score = 89.7 bits (98), Expect = 1e-12 Identities = 60/67 (90%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 142502 TAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGA 142561 ||||||| |||||||| ||||||||||| || ||||||| || |||||||||||||||| Sbjct 561 TAGCCCGTCTAGCTCAGCCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGA 502 Query 142562 GCCCCAC 142568 ||||||| Sbjct 501 GCCCCAC 495 >seq55754 Length=545368 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 480177 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 480236 Query 142563 CCCCAC 142568 |||||| Sbjct 480237 CCCCAC 480242 >seq55646 Length=1502996 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 475646 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 475705 Query 142563 CCCCAC 142568 |||||| Sbjct 475706 CCCCAC 475711 >seq55593 Length=34576 Score = 87.8 bits (96), Expect = 4e-12 Identities = 64/73 (88%), Gaps = 1/73 (1%) Strand=Plus/Plus Query 142496 GTGAGATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGG 142555 || |||| ||||| |||||||| ||||||||||| || ||||||| || |||||||||| Sbjct 31585 GTCAGAT-GCCCGTCTAGCTCAGCCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGG 31643 Query 142556 GTTCGAGCCCCAC 142568 ||||||||||||| Sbjct 31644 GTTCGAGCCCCAC 31656 >seq2030 Length=39061 Score = 87.8 bits (96), Expect = 4e-12 Identities = 64/73 (88%), Gaps = 1/73 (1%) Strand=Plus/Plus Query 142496 GTGAGATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGG 142555 || |||| ||||| |||||||| ||||||||||| || ||||||| || |||||||||| Sbjct 1060 GTCAGAT-GCCCGTCTAGCTCAGCCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGG 1118 Query 142556 GTTCGAGCCCCAC 142568 ||||||||||||| Sbjct 1119 GTTCGAGCCCCAC 1131 >seq1800 Length=99409 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||| ||||||||||| || ||||||| || ||||||||||||||||| Sbjct 37075 AGCCCGTCTAGCTCAGCCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 37134 Query 142563 CCCCAC 142568 |||||| Sbjct 37135 CCCCAC 37140 >seq1576 Length=905477 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||| ||||||||||| || ||||||| || ||||||||||||||||| Sbjct 172798 AGCCCGTCTAGCTCAGCCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 172857 Query 142563 CCCCAC 142568 |||||| Sbjct 172858 CCCCAC 172863 >seq1371 Length=342934 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 147440 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 147381 Query 142563 CCCCAC 142568 |||||| Sbjct 147380 CCCCAC 147375 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 148478 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 148419 Query 142563 CCCCAC 142568 |||||| Sbjct 148418 CCCCAC 148413 >seq1274 Length=115426 Score = 87.8 bits (96), Expect = 4e-12 Identities = 67/78 (86%), Gaps = 1/78 (1%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||| |||||||| ||||||||||| || ||||||| || |||||||||||||||||| Sbjct 6950 GCCCGTCTAGCTCAGCCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 6891 Query 142564 CCCACATCGGGCAGAAGT 142581 ||||| |||| ||||| Sbjct 6890 CCCACGGTGGGC-GAAGT 6874 >seq983 Length=2705936 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||| ||||||||||| || ||||||| || ||||||||||||||||| Sbjct 407544 AGCCCGTCTAGCTCAGCCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 407603 Query 142563 CCCCAC 142568 |||||| Sbjct 407604 CCCCAC 407609 >seq978 Length=1549298 Score = 87.8 bits (96), Expect = 4e-12 Identities = 67/78 (86%), Gaps = 1/78 (1%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||| |||||||| ||||||||||| || ||||||| || |||||||||||||||||| Sbjct 1544420 GCCCGTCTAGCTCAGCCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 1544361 Query 142564 CCCACATCGGGCAGAAGT 142581 ||||| |||| ||||| Sbjct 1544360 CCCACGGTGGGC-GAAGT 1544344 >seq1465 Length=88486 Score = 86.0 bits (94), Expect = 1e-11 Identities = 58/65 (89%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||| |||||||| ||||||||||| || ||||||| || |||||||||||||||||| Sbjct 38186 GCCCGTCTAGCTCAGCCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 38245 Query 142564 CCCAC 142568 ||||| Sbjct 38246 CCCAC 38250 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1026443463470323