Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Juglans_20regia_20[refseq_20GCF_5F001411555.1_202015-10-22] 105,803 sequences; 699,672,627 total letters Query= NC_008725.1 Length=111953 Score E Sequences producing significant alignments: (Bits) Value seq1014 105 5e-18 seq1025 100 2e-16 >seq1014 Length=2264649 Score = 105 bits (116), Expect = 5e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGC 21892 |||||| || ||| | || || || || || |||||||| || | || ||| | Sbjct 109506 AATGCAGATTTTTGTGAAGACTTTGACTGGTAAAACCATAACTCTCGAGGTTGAAAGTTC 109565 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCA 21952 || || | | | || | ||| ||| || || |||||||| | ||| | |||| Sbjct 109566 GGATACAATCGACAATGTCAAGGCAAAGATACAGGACAAAGAGGGCATCCCTCCAGACCA 109625 Query 21953 ACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAA 22012 || || ||||||||||| ||||| || ||||||||| | ||| | || |||||||| Sbjct 109626 GCAAAGGCTTATCTTTGCAGGCAAGCAGCTAGAAGATGGGAGGACTCTTGCAGATTACAA 109685 Query 22013 TATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 |||||||||||||||||| || ||| |||| | || || || || || Sbjct 109686 TATTCAGAAGGAATCTACCCTACATCTGGTGCTGCGCTTGCGTGGTGG 109733 Score = 96.9 bits (106), Expect = 2e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| ||| ||||||| || ||||| |||||||| || ||||| ||| | | Sbjct 108823 ATGCAAATCTTTGTTAAAACCTTGACGGGAAAAACCATAACTTTGGAAGTCGAAAGCTCG 108882 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | || | ||| || || || || |||||| | || | ||||| Sbjct 108883 GACACCATTGATAATGTCAAGGCTAAGATCCAAGACAAGGAGGGTATCCCACCAGACCAA 108942 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||||| | |||||||||||||| ||||| ||||| || | ||||| || ||| Sbjct 108943 CAGAGGTTGATCTTTGCTGGCAAGCAACTTGAAGACGGTCGGACACTTGCCGACTATAAT 109002 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGA 22061 || || |||||||| || || || |||| | ||| | ||||| ||| Sbjct 109003 ATCCAAAAGGAATCAACCCTCCACTTGGTGCTCCGTCTCCGAGGTGGA 109050 Score = 82.4 bits (90), Expect = 5e-11 Identities = 137/198 (69%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGC 21892 ||||||||| ||| | || || | || || ||||| || ||| ||||| ||| | | Sbjct 109050 AATGCAAATTTTTGTGAAGACGCTGACAGGAAAAACTATAACCTTGGAAGTTGAAAGCTC 109109 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCA 21952 || || | | | || | ||| ||| ||| || || ||||| | || | |||| Sbjct 109110 GGATACTATAGACAATGTGAAGGCAAAGATTCAGGACAAGGAGGGAATCCCACCAGACCA 109169 Query 21953 ACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAA 22012 ||||| | || |||||||| || |||||||||||| || ||| | || || || || Sbjct 109170 GCAGAGGTTGATTTTTGCTGGGAAGCAACTAGAAGATGGAAGGACTCTTGCTGACTATAA 109229 Query 22013 TATTCAGAAGGAATCTAC 22030 ||||||||||| || || Sbjct 109230 CATTCAGAAGGAGTCCAC 109247 >seq1025 Length=2429094 Score = 100 bits (110), Expect = 2e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| || ||| | |||||||| || || || ||||||||| |||| || | Sbjct 1182601 ATGCAGATCTTTGTGAAAACATTGACTGGGAAGACCATTACCTTGGAGGTCGAGAGTTCT 1182660 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | || | || ||| ||| || ||||| || ||||| | | || Sbjct 1182661 GATACAATTGATAATGTGAAAGCAAAGATTCAGGACAAAGAAGGAATACCTCCAGATCAG 1182720 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||||| ||||||||||| || ||||| || |||||| || ||| |||| ||||||||| Sbjct 1182721 CAGAGGCTTATCTTTGCGGGTAAACAGCTTGAAGATGGAAGGACTCTGGCGGATTACAAT 1182780 Query 22014 ATTCAGAAGGAATCTACTCTTCA 22036 || |||||||| || ||||| || Sbjct 1182781 ATACAGAAGGAGTCCACTCTGCA 1182803 Score = 96.9 bits (106), Expect = 2e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| ||| | || || || ||||| ||||| || ||| ||||| ||| | | Sbjct 1181917 ATGCAAATCTTTGTGAAGACCTTGACGGGAAAAACTATAACCTTGGAAGTTGAAAGCTCG 1181976 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | || | ||| ||| || || || |||||| | || | || Sbjct 1181977 GATACCATAGATAATGTCAAGGCAAAGATCCAAGACAAGGAGGGTATCCCACCGGATCAG 1182036 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||||| | ||||||||||| || ||| |||||||| || || | ||||||||||| Sbjct 1182037 CAGAGGTTGATCTTTGCTGGGAAGCAATTAGAAGATGGAAGGACATTAGCCGATTACAAC 1182096 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGA 22061 ||||||||||| || || | ||| |||| | ||| | || |||||| Sbjct 1182097 ATTCAGAAGGAGTCCACCTTGCATTTGGTGCTTCGTCTGCGTGGAGGA 1182144 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGC 21892 |||||| || ||| | || || || || || ||||||||||| |||| || | | Sbjct 1182144 AATGCAGATTTTTGTCAAGACCTTGACTGGAAAAACCATTACTTTGGAGGTTGAGAGCTC 1182203 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCA 21952 || || | | || | ||| || ||| || ||||| ||| | || | |||| Sbjct 1182204 CGATACCATTGATAATGTGAAGGCTAAGATTCAAGACAAAGAAGGTATCCCACCAGACCA 1182263 Query 21953 ACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAA 22012 ||||| | || ||||||||||| || |||| ||| | || | ||||||||||| Sbjct 1182264 GCAGAGGTTGATTTTTGCTGGCAAGCAGTTAGAGGATGGACGGACCTTAGCCGATTACAA 1182323 Query 22013 TATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 |||||| |||||||| ||| | || |||| | ||||| |||||||| Sbjct 1182324 TATTCAAAAGGAATCGACTTTGCACTTGGTGCTGCGTTTGCGAGGAGG 1182371 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| || ||| | || || | || || ||||||||||| |||| || | Sbjct 1182373 ATGCAGATTTTTGTGAAGACTCTGACCGGAAAAACCATTACATTGGAGGTCGAGAGTTCG 1182432 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | | || | ||| || ||| || ||||| ||| | || | | || Sbjct 1182433 GACACAATTGACAATGTCAAGGCGAAGATTCAGGACAAAGAAGGTATTCCACCAGATCAG 1182492 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 || || ||||||||||| ||||| || || ||||| | ||| | || ||||||||| Sbjct 1182493 CAAAGGCTTATCTTTGCAGGCAAGCAGCTTGAAGACGGGAGGACTCTTGCAGATTACAAT 1182552 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGT 22042 ||||||||||| ||||| |||||| |||| Sbjct 1182553 ATTCAGAAGGAGTCTACCCTTCATCTGGT 1182581 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357663007359262