Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Juglans_20regia_20[refseq_20GCF_5F001411555.1_202015-10-22] 105,803 sequences; 699,672,627 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq54992 288 2e-72 seq50617 232 1e-55 seq4953 105 1e-17 >seq54992 Length=480207 Score = 288 bits (318), Expect = 2e-72 Identities = 584/863 (68%), Gaps = 8/863 (1%) Strand=Plus/Minus Query 42284 GATCGAGCACCAGGACATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGC 42343 |||| || ||| ||| || ||| ||||||||||| || || ||| ||||||||| Sbjct 460651 GATCCAGTACCCGGAAATATGGGAAATGTACAAGAAAGCTGAGGCCTCATTCTGGACCGC 460592 Query 42344 CGAGGAGATTGACCTGGCCAAGGACACGGCCGGCTGGGAGTCACTGTCTGAGAACGAAAA 42403 ||||||| ||||||| || ||||| | ||||| || || ||| |||| || Sbjct 460591 CGAGGAGGTTGACCTCTCCGAGGACCTTTCTCATTGGGAATCCCTTTCTCCCGACGAGAA 460532 Query 42404 GTTTTTCCTCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAA 42463 ||| | |||| || |||||||| ||||||||||||||||| || ||||| Sbjct 460531 ACACTTCATTTCCCACATCCTTGCCTTCTTTGCCGCCTCTGACGGCATCGTTTTGGAGAA 460472 Query 42464 CCTGGCCACCAGGTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTT 42523 || || |||||||||||| ||||| ||| | ||||| ||| |||||||||||| Sbjct 460471 TCTCGCTGGCAGGTTCATGAAGGAGGTCCAGGTCGCCGAGGCCCGCGCCTTCTACGGCTT 460412 Query 42524 CCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACAT 42583 |||||| ||||| ||||| | ||||| ||| ||||| ||||| | || ||||| Sbjct 460411 CCAGATCGCCATCGAGAATATTCACTCCGAGATGTACAGTCTTTTGCTCGAGACCTACAT 460352 Query 42584 CCTGGATCCCGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAA 42643 | ||| ||| | || || | || ||| | ||||| ||||| | || ||| || Sbjct 460351 CAAGGACTCCGCCCAGAAGCACCGCCTCTTCCACGCCATCGAGACCGTCCCTTGCGTCGC 460292 Query 42644 GAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAG 42703 |||||||| | ||||| || ||||||||| | |||| | |||| ||| | Sbjct 460291 TAAGAAGGCACAGTGGGCCCTGCGCTGGATCGACGGGGCCGA---GTCCTTCGCTGAGCG 460235 Query 42704 GCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTT 42763 | || || || | || || || ||||||||||| || |||| | ||||||| Sbjct 460234 CATCGTCGCTTTCGCGTGTGTAGAAGGTATCTTCTTCTCCGGAAGCTTCTGCGCCATCTT 460175 Query 42764 CTGGCTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAG 42823 |||| | ||| || | | ||||||||| || |||||||| ||||| || ||| | Sbjct 460174 CTGGTTGAAGAAGCGCGGCTTGATGCCCGGTCTGACCTTCTCCAACGAGCTGATCTCGCG 460115 Query 42824 GGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAA 42883 ||||||||||| || | ||||| || ||||| || | ||| | | | | | || Sbjct 460114 AGACGAGGGGCTCCACTGCGACTTCGCGTGCCTGCTTTACTC---TCTCTTGAAAAAAAA 460058 Query 42884 GCCCTCGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTT 42943 || | |||| || || |||||| || || ||||| ||||||| ||||| Sbjct 460057 GCTGAGTGAACAGCGCATCAAGGGAATCATCCGCGACGCGGTGGACATCGAGAGAGAGTT 459998 Query 42944 CCTCACGCAGTCGCTGCC-CGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGT 43002 | | | ||||||| ||| | |||| || |||||| ||| || ||| || ||| Sbjct 459997 CGTGTGCGACGCGCTGCCATGTG-CGTTGGTGGGAATGAACGGCGAGCTGATGAGCCAGT 459939 Query 43003 ACATCCAGTACGTCGCCGACCATCTCCTGTGCCAGATGGGTCTCAGCCGCCTCTACAACA 43062 ||||| | | ||| |||||| || || | | | || | | |||||||| Sbjct 459938 ACATCGAATTCGTGGCCGACAGGCTATTGGGTGCGCTAGGGTACGGGAAGATCTACAACG 459879 Query 43063 CGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCG 43122 | | ||||||||| | |||||| |||||||||| | || |||||||| || || | Sbjct 459878 TCCAGAACCCCTTCGATTGGATGGAGCTCATCTCGTTGCAAGGGAAGACCAATTTCTTTG 459819 Query 43123 AGAAGCGCGTCGCCGACTACCAG 43145 ||||| | |||| || |||||| Sbjct 459818 AGAAGAGAGTCGGGGAGTACCAG 459796 >seq50617 Length=115889 Score = 232 bits (256), Expect = 1e-55 Identities = 578/870 (66%), Gaps = 22/870 (3%) Strand=Plus/Plus Query 42284 GATCGAGCACCAGGACATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGC 42343 |||| || ||| || || ||| ||||||||||| || || ||| |||||| || Sbjct 91864 GATCCAGTACCCCGAAATATGGGAGATGTACAAGAAAGCCGAGGCCTCTTTCTGGACTGC 91923 Query 42344 CGAGGAGATTGACCTGGCCAAGGACA-CGGCCGGCTGGGAG---TCACTGTCTGAGAACG 42399 ||||||| ||||||| | ||||| | ||| || || |||| | || | Sbjct 91924 CGAGGAGGTTGACCTCTCTCAGGACCTCCGCCAATGGGAAGCCCTCACCCCC-GACGAGA 91982 Query 42400 AAAAGTTT-TTCCTCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAAT 42458 || | ||| || | || | | || || ||||| || || || || ||||| || Sbjct 91983 AACACTTTATTTCCCA----CGTCCTAGCTTTCTTTGCAGCTTCAGATGGCATCGTTTTG 92038 Query 42459 GAGAACCTGGCCACCAGGTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTAC 42518 |||||||| || ||||||||||| ||||| ||| ||||| ||| ||||||| Sbjct 92039 GAGAACCTCGCTGGGAGGTTCATGAAGGAGGTCCAGGTTGCCGAGGCCCGCGCCTTCTAC 92098 Query 42519 GGCTTCCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACG 42578 ||||||||||| ||||| || || | ||||| ||| |||| |||| | || Sbjct 92099 GGCTTCCAGATTGCCATCGAAAATATTCACTCCGAGATGTATAGTCTGTTGCTGGAGACC 92158 Query 42579 TACATCCTGGATCCCGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGC 42638 |||||| |||| | | ||| || | || ||| | ||||| ||||| | ||||| Sbjct 92159 TACATCAAGGATTCAGATGAGAAGCACCGCCTCTTCCATGCCATCGAGACCGTCCCCTGT 92218 Query 42639 ATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGC 42698 | |||||||| | ||||| || ||||||||| | | || | || | Sbjct 92219 GTGGCTAAGAAGGCCCAGTGGGCCCTGCGCTGGATCGACGGCTCGGAGTCC---TTTGCG 92275 Query 42699 GAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCC 42758 ||| | || | ||||| | |||||| || ||||||||||| || |||| | || Sbjct 92276 GAGCGTCTCATCGCCTTCGCGTGCGTCGAAGGGATCTTCTTCTCCGGAAGCTTCTGCGCC 92335 Query 42759 ATCTTCTGGCTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATC 42818 || |||||| | || || | || |||||| || ||||||||||| ||||| || ||| Sbjct 92336 ATATTCTGGTTGAAAAAGCGCGGGTTGATGCCTGGTCTCACCTTCTCCAACGAGCTGATC 92395 Query 42819 AGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGG 42878 | | ||||||||||||||| | ||||| || ||||| || | | | || ||| ||| Sbjct 92396 TCCCGTGACGAGGGGCTGCATTGCGACTTCGCGTGCCTGCTATAC---ACCCTCCTAAGG 92452 Query 42879 CACAAGCCCTCGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAG 42938 | |||| || |||| ||| || ||| || || || ||||||||||||| | Sbjct 92453 AAGAAGCTGAGTGAGCAGCGCGTCAAGGGGATCGTCCGCGACGCGGTGGAGATCGAGAGG 92512 Query 42939 GAGTTCCTCACGCAGTCGCTGCC---CGTGTCCCTGGTCGGCATGAACCACGACCTCATG 42995 |||||| | | |||| || || || |||| || |||||| || || ||| Sbjct 92513 GAGTTCGTGTGCGACGCGCTACCATGCGCGT---TGGTGGGGATGAACGGAGATCTGATG 92569 Query 42996 TGCAAGTACATCCAGTACGTCGCCGACCATCTCCTGTGCCAGATGGGTCTCAGCCGCCTC 43055 || |||||||| ||| ||| ||||| ||| || || | | || | | || Sbjct 92570 AGCCAGTACATCGAGTTCGTGGCCGATAGGCTCTTGGGCGCGTTCGGATGCGGAAAGATC 92629 Query 43056 TACAACACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAAC 43115 ||||| | | ||| || || | |||||| ||||||||| | || |||||||| Sbjct 92630 TACAATGTTCAGAACCCGTTTGATTGGATGGAGCTGATCTCGTTGCAAGGGAAGACCAAT 92689 Query 43116 TTTTTCGAGAAGCGCGTCGCCGACTACCAG 43145 || ||||| ||| | |||| || |||||| Sbjct 92690 TTCTTCGAAAAGAGGGTCGGAGAGTACCAG 92719 >seq4953 Length=3437 Score = 105 bits (116), Expect = 1e-17 Identities = 150/211 (71%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 42284 GATCGAGCACCAGGACATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGC 42343 |||| || ||| ||| || ||| ||||||||||| || || ||| ||||||||| Sbjct 225 GATCCAGTACCCGGAAATATGGGAAATGTACAAGAAAGCTGAGGCCTCATTCTGGACCGC 166 Query 42344 CGAGGAGATTGACCTGGCCAAGGACACGGCCGGCTGGGAGTCACTGTCTGAGAACGAAAA 42403 ||||||| ||||||| || ||||| | ||||| || || ||| |||| || Sbjct 165 CGAGGAGGTTGACCTCTCCGAGGACCTTTCTCATTGGGAATCCCTTTCTCCCGACGAGAA 106 Query 42404 GTTTTTCCTCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAA 42463 ||| | |||| || |||||||| ||||||||||||||||| || ||||| Sbjct 105 ACACTTCATTTCCCACATCCTTGCCTTCTTTGCCGCCTCTGACGGCATCGTTTTGGAGAA 46 Query 42464 CCTGGCCACCAGGTTCATGAAAGAGGTGCAG 42494 || || |||||||||||| ||||| ||| Sbjct 45 TCTCGCTGGCAGGTTCATGAAGGAGGTCCAG 15 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 943090275995280