Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Juglans_20regia_20[refseq_20GCF_5F001411555.1_202015-10-22] 105,803 sequences; 699,672,627 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq1025 98.7 8e-16 seq1868 84.2 2e-11 >seq1025 Length=2429094 Score = 98.7 bits (108), Expect = 8e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||| | ||| || ||||||| ||| | ||| ||||||||||||||||||||| || Sbjct 1182143 CCTCCACGCAGACGAAGCACCAAATGCAAGGTGGACTCCTTCTGAATGTTGTAATCGGCT 1182084 Query 33961 AATTGTCGCT-CGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 || |||| | | || || |||||||| || ||||| |||| | |||||||||| || Sbjct 1182083 AA-TGTCCTTCCATCTTCTAATTGCTTCCCAGCAAAGATCAACCTCTGCTGATCCGGTGG 1182025 Query 34020 CACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGATTCGCA 34079 | | ||| ||||| || ||| ||| | | | |||| | ||| Sbjct 1182024 GATACCCTCCTTGTCTTGGATCTTTGCCTTGACATTATCTATGGTATCCGAGCTTTCAAC 1181965 Query 34080 TTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 ||| | ||||| |||||||| || | || ||||||||||||||||| Sbjct 1181964 TTCCAAGGTTATAGTTTTTCCCGTCAAGGTCTTCACAAAGATTTGCAT 1181917 Score = 86.0 bits (94), Expect = 5e-12 Identities = 89/114 (78%), Gaps = 2/114 (2%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || | ||| ||||||||||||||||| || |||||||||||| |||||||||| | Sbjct 1182599 CCACCACGCAGGCGCAGCACCAGATGAAGGGTAGACTCCTTCTGAATATTGTAATCTG-C 1182541 Query 33961 AATTGT-CGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013 || || | | |||| || | |||||||| ||||| || || | |||||||| Sbjct 1182540 AAGAGTCCTCCCGTCTTCAAGCTGCTTGCCTGCAAAGATAAGCCTTTGCTGATC 1182487 >seq1868 Length=298818 Score = 84.2 bits (92), Expect = 2e-11 Identities = 83/105 (79%), Gaps = 2/105 (2%) Strand=Plus/Minus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGT-CG 33968 || || || || ||||| || ||| ||||||||||||||| || || || || || || Sbjct 224144 AGACGTAGGACGAGATGGAGGGTGGACTCCTTCTGAATGTTATAGTCGGC-AAGGGTGCG 224086 Query 33969 CTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013 | || ||||||||||||||||| || ||||| ||||||||||| Sbjct 224085 ACCATCCTCCAATTGCTTGCCGGCGAAGATCAGACGCTGCTGATC 224041 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396550398334006