Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Juglans_20regia_20[refseq_20GCF_5F001411555.1_202015-10-22] 105,803 sequences; 699,672,627 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq54992 141 2e-28 seq50617 132 1e-25 >seq54992 Length=480207 Score = 141 bits (156), Expect = 2e-28 Identities = 354/533 (66%), Gaps = 6/533 (1%) Strand=Plus/Minus Query 243208 CTTTTCGACGCCATCGAAAACATTCCGGCGGTTCATAACAAGGCAAAATGGGCTCAGAAG 243267 || ||| |||||||||| | | | || || ||| |||||| | ||||| | | Sbjct 460326 CTCTTCCACGCCATCGAGACCGTCCCTTGCGTCGCTAAGAAGGCACAGTGGGCCCTGCGC 460267 Query 243268 TGGCTAGAACCCGGTAAATCATTTGCTGAGCGTCTCGTCGCCTGGGTGTGCGTTGAAGGT 243327 ||| | || | | || || |||||||| ||||||| | | ||| || |||||| Sbjct 460266 TGGATCGACGGGGCCGAGTCCTTCGCTGAGCGCATCGTCGCTTTCGCGTGTGTAGAAGGT 460207 Query 243328 ATTCTGTTTTCCGGGAGTTTCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCT 243387 || | || ||||| || |||||||||||||| ||| || ||| || ||||||| Sbjct 460206 ATCTTCTTCTCCGGAAGCTTCTGCGCCATCTTCTGGTTGAAGAAGCGCGGCTTGATGCCC 460147 Query 243388 GGCCTCGGTCTGTCTAACGAGTTCATCAGTCGCGACGAGGGCCTTCACCAACAGTTCG-G 243446 || || | || |||||| | ||| || |||||||| || ||| | |||| | Sbjct 460146 GGTCTGACCTTCTCCAACGAGCTGATCTCGCGAGACGAGGGGCTCCACTGCGACTTCGCG 460087 Query 243447 TGAGCTTATGTATTCAAAGCTCCAGAACAAGCTACCATTCGAAACGG--TCAAACAAATC 243504 || || | || || | | || ||||| | | | | | |||| |||| Sbjct 460086 TGC-CTGCTTTACTCTCTCTTGAAAAAAAAGCTG--AGTGAACAGCGCATCAAGGGAATC 460030 Query 243505 ATCACAGAAGCAGTTGAAAACGAAAAGGAATTCATTTGCGACGCTATTCCATGCCGGCTT 243564 ||| || || || || | ||| | || ||| | |||||||| | ||||| | | Sbjct 460029 ATCCGCGACGCGGTGGACATCGAGAGAGAGTTCGTGTGCGACGCGCTGCCATGTGCGTTG 459970 Query 243565 ATTGGCATGAACTCTGAACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTC 243624 | || |||||| || || ||| | ||||||||||||||||| |||||| | | || Sbjct 459969 GTGGGAATGAACGGCGAGCTGATGAGCCAGTACATCGAATTCGTGGCCGACAGGCTATTG 459910 Query 243625 ATCGCGCTTGGTTATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTC 243684 ||||| || || | ||| | |||||| | |||||||||| | | ||||||||| Sbjct 459909 GGTGCGCTAGGGTACGGGAAGATCTACAACGTCCAGAACCCCTTCGATTGGATGGAGCTC 459850 Query 243685 ATTTCGCTTCAAGGGAAAACTAACTTCTTCGAAAAGCGTGTCAGTGATTATCA 243737 || ||| | |||||||| || || ||||| || ||| | ||| | || || || Sbjct 459849 ATCTCGTTGCAAGGGAAGACCAATTTCTTTGAGAAGAGAGTCGGGGAGTACCA 459797 >seq50617 Length=115889 Score = 132 bits (146), Expect = 1e-25 Identities = 307/455 (67%), Gaps = 6/455 (1%) Strand=Plus/Plus Query 243286 TCATTTGCTGAGCGTCTCGTCGCCTGGGTGTGCGTTGAAGGTATTCTGTTTTCCGGGAGT 243345 || ||||| ||||||||| |||||| | |||||| ||||| || | || ||||| || Sbjct 92267 TCCTTTGCGGAGCGTCTCATCGCCTTCGCGTGCGTCGAAGGGATCTTCTTCTCCGGAAGC 92326 Query 243346 TTCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAAC 243405 ||||||||||| || ||| || || || |||||||||| ||| | || ||| Sbjct 92327 TTCTGCGCCATATTCTGGTTGAAAAAGCGCGGGTTGATGCCTGGTCTCACCTTCTCCAAC 92386 Query 243406 GAGTTCATCAGTCGCGACGAGGGCCTTCACCAACAGTTCG-GTGAGCTTATGTATTCAAA 243464 ||| | ||| || |||||||| || || | |||| ||| || | || | Sbjct 92387 GAGCTGATCTCCCGTGACGAGGGGCTGCATTGCGACTTCGCGTGC-CTGCTATACACCCT 92445 Query 243465 GCTCCAGAACAAGCTACCATTCGAAACG-GTCAAACAAATCATCACAGAAGCAGTTGAAA 243523 || ||| ||||| | | | || ||||| ||| || || || || || | Sbjct 92446 CCTAAGGAAGAAGCTGAG-TGAGCAGCGCGTCAAGGGGATCGTCCGCGACGCGGTGGAGA 92504 Query 243524 ACGAAAAGGAATTCATTTGCGACGCTATTCCATGCCGGCTTATTGGCATGAACTCTGAAC 243583 ||| | ||| ||| | |||||||| | |||||| | | | || |||||| || | Sbjct 92505 TCGAGAGGGAGTTCGTGTGCGACGCGCTACCATGCGCGTTGGTGGGGATGAACGGAGATC 92564 Query 243584 TCATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTATGAGA 243643 | ||| | ||||||||||| ||||| ||||| | | || |||| | || | | || Sbjct 92565 TGATGAGCCAGTACATCGAGTTCGTGGCCGATAGGCTCTTGGGCGCGTTCGGATGCG-GA 92623 Query 243644 AAG-TGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGGAAA 243702 ||| | ||||| ||||||| |||| | |||||||| || ||| | |||||||| Sbjct 92624 AAGATCTACAATGTTCAGAACCCGTTTGATTGGATGGAGCTGATCTCGTTGCAAGGGAAG 92683 Query 243703 ACTAACTTCTTCGAAAAGCGTGTCAGTGATTATCA 243737 || || |||||||||||| | ||| | || || || Sbjct 92684 ACCAATTTCTTCGAAAAGAGGGTCGGAGAGTACCA 92718 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1101384934838050