Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Juglans_20regia_20[refseq_20GCF_5F001411555.1_202015-10-22] 105,803 sequences; 699,672,627 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq50617 147 3e-30 seq54992 140 4e-28 seq51103 113 5e-20 seq48769 104 3e-17 seq1182 98.7 1e-15 >seq50617 Length=115889 Score = 147 bits (162), Expect = 3e-30 Identities = 380/569 (67%), Gaps = 19/569 (3%) Strand=Plus/Minus Query 125758 GTAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCAT 125817 ||| || || |||| ||| |||||||| || |||||||| | ||| ||| |||||| Sbjct 92716 GTACTCTCCGACCCTCTTTTCGAAGAAATTGGTCTTCCCTTGCAACGAGATCAGCTCCAT 92657 Query 125818 AAAATCAAATGGGTTCTTTGAGTTCCAAATTGTTG-GCACCCCAATCTGTTTGAGGAGAC 125876 ||||||| ||||||| || | || || ||| || || | || || | Sbjct 92656 CCAATCAAACGGGTTCTGAACATTGTAGATCTTTCCGCATCCGAACGCGCCCAAG-AGCC 92598 Query 125877 GATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTAC 125936 ||| | ||| |||| ||||||| |||| || |||||| || | | | Sbjct 92597 TATCGGCCACGAACTCGATGTACTGGCTCATCAGATCTCCGTTCATCCCCACCAACGCGC 92538 Query 125937 ATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATTTCCACGGCTTCCCGCACGATGGCGT 125996 |||| |||||||| | | |||| || |||| || ||||| || || || ||||| | | Sbjct 92537 ATGGTAGCGCGTCGCACACGAACTCCCTCTCGATCTCCACCGCGTCGCGGACGATCCCCT 92478 Query 125997 GAATGGTGTCCACCC-CAGGTCTATTGC---GCAAAGTCTTGAAGAGTTCCACGGCAAAC 126052 | | | | | | ||| | | || | | | || | | || |||| | || Sbjct 92477 TGACGCGCTGCTCACTCAGCT-TCTTCCTTAGGAGGGTGTATAGCAGG--CACG-CGAAG 92422 Query 126053 TCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATG 126112 || || || ||||||||||||||||| || || || |||||| || || ||||| Sbjct 92421 TCGCAATGCAGCCCCTCGTCACGGGAGATCAGCTCGTTGGAGAAGGTGAGACCAGGCATC 92362 Query 126113 AGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCC 126172 | || ||||| ||||||||||| || || || || || ||||||||||| || || Sbjct 92361 AACCCGCGCTTTTTCAACCAGAATATGGCGCAGAAGCTTCCGGAGAAGAAGATCCCTTCG 92302 Query 126173 ACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGCGACTTTGTGTCAAACCACTTC 126232 || |||||||| || | ||||||||| |||||||| ||| ||| | ||| | Sbjct 92301 ACGCACGCGAAGGCGATGAGACGCTCCGCAAAGGACTCCGA---GCCGTCGATCCAGCGC 92245 Query 126233 ATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGA---GT 126289 | |||||||| ||||| || | | ||| |||||||||| ||| || | |||| | Sbjct 92244 AGGGCCCACTGGGCCTTCTTAGCCACACAGGGGACGGTCTCGATGGCATGGAAGAGGCGG 92185 Query 126290 TCCTTCTTTTCTGATGGATCTTTGATGTA 126318 | ||||| ||||| ||| |||||||| Sbjct 92184 TGCTTCTCATCTGA---ATCCTTGATGTA 92159 >seq54992 Length=480207 Score = 140 bits (154), Expect = 4e-28 Identities = 171/231 (74%), Gaps = 3/231 (1%) Strand=Plus/Plus Query 126058 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACC 126117 |||||| |||||||| || ||||| || || || |||||| ||| || ||||| | || Sbjct 460099 GTGGAGCCCCTCGTCTCGCGAGATCAGCTCGTTGGAGAAGGTCAGACCGGGCATCAAGCC 460158 Query 126118 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACA 126177 ||||||||||||||||| || || || || || ||||||||||| || || ||||| Sbjct 460159 GCGCTTCTTCAACCAGAAGATGGCGCAGAAGCTTCCGGAGAAGAAGATACCTTCTACACA 460218 Query 126178 CGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGCGACTTTGTGTCAAACCACTTCATCGC 126237 |||||| || | || |||||||| ||||| | || | ||| | ||| || || Sbjct 460219 CGCGAAAGCGACGATGCGCTCAGCGAAGGA-CTCGGC--CCCGTCGATCCAGCGCAGGGC 460275 Query 126238 CCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAG 126288 |||||| ||||| || ||| || |||||||||| ||| || | ||||| Sbjct 460276 CCACTGTGCCTTCTTAGCGACGCAAGGGACGGTCTCGATGGCGTGGAAGAG 460326 >seq51103 Length=109835 Score = 113 bits (124), Expect = 5e-20 Identities = 243/356 (68%), Gaps = 17/356 (5%) Strand=Plus/Minus Query 8585 GACACCCTTCTATCCACGATCCGTCTATG--GCGTCTCAAAGGTTGCGGCACATTGGCTC 8642 ||| || ||| |||| |||||| || | ||||| |||| | || || |||||| | Sbjct 21342 GACGCCGTTCCATCCCCGATCCCCATACGCCGCGTC-CAAATGC-GCCGCGCATTGGTAC 21285 Query 8643 GTGAAGAATTACCGAGAATCCTATGGTCTCTTTGCGTGCTCCGGTATTCTCTTCAACCAC 8702 | ||| ||||| || | ||||| | | ||||||| || || |||||||| ||| Sbjct 21284 ACGGTGAACTACCGCGAGGCGTATGGGATATATGCGTGCAATGGGATACTCTTCAATCAC 21225 Query 8703 GAGTCACCCCGTCGTGGCCCGGATTTCGTGACAAAGAAGATCAC-----CGATGGTATCA 8757 ||||| || || || ||| | | |||||||| | ||||||||| || ||| | Sbjct 21224 GAGTCGCCGCGGCGGGGCGAGAACTTCGTGACGAGGAAGATCACGCGTGCGGTGGGACGG 21165 Query 8758 AACAA-ATCGTCGCGGGTGAGAGGGAGTTCATTGAATTGGGGAACCTCAACGCCGAGAGG 8816 | ||| |||| | | || || || | | ||||| |||| |||| ||| Sbjct 21164 ATCAAGATCGGCCTCC---AAAGCAAGCTCTTCC---TTGGGAATCTCAGCGCCTCCAGG 21111 Query 8817 GACTGGGGACACGCCAAGGACTATGTTGAAGCCATGTGGCTCGTACTTCAACAAGAAGAG 8876 ||||||||| |||| |||||| || || || |||||| | | || || ||||| || Sbjct 21110 GACTGGGGATTCGCCGGGGACTACGTGGAGGCAATGTGGATGATGCTGCAGCAAGACAAG 21051 Query 8877 GCGGACGAATATGTCGTCGCGACGGGGGAGACACACTCCGTCAGGGAGTTCGTTGA 8932 ||||||| || || || ||||||| |||| | ||| | || ||||||| |||| Sbjct 21050 CCGGACGACTACGTGGTTGCGACGGAGGAGTCGCACACGGTGGAGGAGTTC-TTGA 20996 >seq48769 Length=5169 Score = 104 bits (114), Expect = 3e-17 Identities = 200/291 (69%), Gaps = 13/291 (4%) Strand=Plus/Minus Query 8648 GAATTACCGAGAATCCTATGGTCTCTTTGCGTGCTCCGGTATTCTCTTCAACCACGAGTC 8707 ||| ||||| || | ||||| | | ||||||| || || |||||||| |||||||| Sbjct 5123 GAACTACCGCGAGGCGTATGGGATATATGCGTGCAATGGGATACTCTTCAATCACGAGTC 5064 Query 8708 ACCCCGTCGTGGCCCGGATTTCGTGACAAAGAAGATCAC-----CGATGGTATCAAACAA 8762 || || || ||| | | |||||||| | ||||||||| || ||| | | ||| Sbjct 5063 GCCGCGGCGGGGCGAGAACTTCGTGACGAGGAAGATCACGCGTGCGGTGGGACGGATCAA 5004 Query 8763 -ATCGTCGCGGGTGAGAGGGAGTTCATTGAATTGGGGAACCTCAACGCCGAGAGGGACTG 8821 |||| | | || || || | | ||||| |||| |||| |||||||| Sbjct 5003 GATCGGCCTCC---AAAGCAAGCTCTTCC---TTGGGAATCTCAGCGCCTCCAGGGACTG 4950 Query 8822 GGGACACGCCAAGGACTATGTTGAAGCCATGTGGCTCGTACTTCAACAAGAAGAGGCGGA 8881 |||| |||| |||||| || || || |||||| | | || || ||||| || |||| Sbjct 4949 GGGATTCGCCGGGGACTACGTGGAGGCAATGTGGATGATGCTGCAGCAAGACAAGCCGGA 4890 Query 8882 CGAATATGTCGTCGCGACGGGGGAGACACACTCCGTCAGGGAGTTCGTTGA 8932 ||| || || || ||||||| |||| | ||| | || ||||||| |||| Sbjct 4889 CGACTACGTGGTTGCGACGGAGGAGTCGCACACGGTGGAGGAGTTC-TTGA 4840 >seq1182 Length=383271 Score = 98.7 bits (108), Expect = 1e-15 Identities = 192/279 (69%), Gaps = 6/279 (2%) Strand=Plus/Minus Query 10876 AAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCGGG 10935 ||| ||||||||||| |||||||| || ||||| ||||| || | ||||||||| | Sbjct 49771 AAACCCATCCATCTCCGTCAAGAGCTGGTTGATAGTTTGCTCCCTCTCATCATTCCC--A 49714 Query 10936 CATACCA--CCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATA 10993 | | | | ||||| | | ||| | || || || ||||| ||||||||||| || || Sbjct 49713 CCTCCAAGCCCCGCCCCTCTCTGCCTCCCCACCGCATCAATCTCATCGATGAACACAATG 49654 Query 10994 CACGGTTGATTTTCAC-GGGCAACTTCAAAGATATCTCGGACTCTCTTGGCACCGACACC 11052 ||||| | ||| || ||| || || | || | |||||| || || || || Sbjct 49653 CACGG-CGCTTTCGACTTGGCTTTCTCGAACAAGTCCCTCACTCTCGAAGCCCCAACTCC 49595 Query 11053 CACAAACATTTCCACAAAATTGGCGGCGGAACATTGGATGAAGGGGACGTTGGATTCACC 11112 |||||||| ||||||||| | | |||| ||| || ||| || ||| | || || Sbjct 49594 CACAAACAATTCCACAAACTCCGAAGCGGCACACGAGAAGAATGGCACGCCTGCCTCGCC 49535 Query 11113 CGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCAGG 11151 | || |||| || | ||||||||||| || || || Sbjct 49534 TGAGACTGCTCTTGCCAATAGGGTCTTCCCAGTACCGGG 49496 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596563577463240