Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Juglans_20regia_20[refseq_20GCF_5F001411555.1_202015-10-22] 105,803 sequences; 699,672,627 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq51957 96.9 3e-15 seq1761 87.8 2e-12 >seq51957 Length=105213 Score = 96.9 bits (106), Expect = 3e-15 Identities = 146/205 (71%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 94992 ACAGGGCATTTTTCAGTTCGACCTCTGGGGTGTGAAGCCCTCGGGTCTGTACGACTGGGA 95051 |||||| ||| ||||| ||| | |||||||| | || || ||||| || ||| | Sbjct 21755 ACAGGGAATTCTTCAGCCAGACATGTGGGGTGTAACACCTTCAAATCTGTGGGATTGGAA 21814 Query 95052 AGCTCTACGCGCTGATGTTATCAAACAC-GGTGTGAAAAACGCGCTGCTTGTGGCCCCCA 95110 ||||| | | |||| |||| || | ||||| | ||| | || ||||| ||||||| Sbjct 21815 TGCTCTTAGGGA-GATGATATCCAAGAATGGTGTTAGAAATTCACTTCTTGTAGCCCCCA 21873 Query 95111 TGCCCACGGCCTCCACGGCGCAGATCCTTGGCAACAACGAGTCGTTCGAACCCTTCACCT 95170 |||| || || ||||| ||||| ||||| || ||||||| || ||||| | |||| Sbjct 21874 TGCCGACCGCTTCCACCAGCCAGATTCTTGGTAATAACGAGTGTTTTGAACCATATACCT 21933 Query 95171 CCAACGTGTACAACAGGCGGGTGCT 95195 ||||| | |||| |||| || || Sbjct 21934 CCAACATATACAGTCGGCGAGTTCT 21958 >seq1761 Length=289715 Score = 87.8 bits (96), Expect = 2e-12 Identities = 136/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 94992 ACAGGGCATTTTTCAGTTCGACCTCTGGGGTGTGAAGCCCTCGGGTCTGTACGACTGGGA 95051 |||||| ||| ||||| ||| | |||||||| | || || || || || ||| | Sbjct 162608 ACAGGGAATTCTTCAGCCAGACATGTGGGGTGTAACACCTTCAAATCGGTGGGATTGGAA 162549 Query 95052 AGCTCTACGCGCTGATGTTATCAAACAC-GGTGTGAAAAACGCGCTGCTTGTGGCCCCCA 95110 ||||| | | |||| |||| || | ||||| | ||| | || ||||| ||||||| Sbjct 162548 TGCTCTTAGGGA-GATGATATCTAAGAATGGTGTTAGAAATTCACTTCTTGTAGCCCCCA 162490 Query 95111 TGCCCACGGCCTCCACGGCGCAGATCCTTGGCAACAACGAGTCGTTCGAACCCTTCACCT 95170 |||| || || ||||| ||||| ||||| ||||| |||| |||||||| | || | Sbjct 162489 TGCCAACTGCTTCCACCAGCCAGATTCTTGGAAACAATGAGTGCTTCGAACCATATACAT 162430 Query 95171 CCAACGTGTACA 95182 | ||| | |||| Sbjct 162429 CTAACATATACA 162418 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494068910015880