Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Juglans_20regia_20[refseq_20GCF_5F001411555.1_202015-10-22] 105,803 sequences; 699,672,627 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq1868 104 2e-17 seq49365 95.1 1e-14 seq55116 89.7 5e-13 seq1025 84.2 2e-11 seq1014 84.2 2e-11 seq1533 82.4 8e-11 >seq1868 Length=298818 Score = 104 bits (114), Expect = 2e-17 Identities = 146/199 (73%), Gaps = 6/199 (3%) Strand=Plus/Minus Query 138419 TTGACTCCTTTTGAATGTTGTAGTC-GCTCATAGTACGCGAGTCCTCGAGTTGTTTACCG 138477 |||||||||||||||||||||| || ||| | |||||| ||||| | ||| || ||| Sbjct 224578 TTGACTCCTTTTGAATGTTGTAATCAGCT-AGGGTACGCCCATCCTCCAATTGCTTCCCG 224520 Query 138478 GAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTT 138537 | | |||| || | || ||||||||||| || ||||| ||||| ||| | || | || Sbjct 224519 GCAAAGATGAGCCTTTGCTGGTCCGGAGGAATGCCTTCCTTGTC-CTGAATCTTAGCCTT 224461 Query 138538 AA--TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAG 138595 | ||| || | |||||| | ||||||||| | || | ||||| || |||| | Sbjct 224460 CACGTTG-TCGATGGTGTCCGAGCTCTCCACCTCCAGAGTGATGGTTTTTCCTGTCAAGG 224402 Query 138596 TTTTTACAAAAATCTGCAT 138614 | || ||||| |||||||| Sbjct 224401 TCTTAACAAAGATCTGCAT 224383 >seq49365 Length=33059 Score = 95.1 bits (104), Expect = 1e-14 Identities = 138/195 (71%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| ||||| ||||||||| | ||||| |||||| || || || |||| | Sbjct 27410 GACTCCTTCTGAATATTGTAGTCGGCAAGGGTACGGCCGTCCTCCAGCTGCTTGCCGGCA 27351 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| || | ||| |||||||| || ||||| || ||||| ||| || || | Sbjct 27350 AAGATCAGCCTCTGCTGGTCCGGTGGGATACCCTCCTTGTCCTGGATCTTGGCCTTGACA 27291 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | |||||| | ||| ||||| | || | ||| || || || || ||||| Sbjct 27290 TTATCGATGGTGTCAGAGCTCTCAACCTCCAAGGTGATCGTCTTTCCCGTGAGGGTTTTG 27231 Query 138601 ACAAAAATCTGCATG 138615 || |||||||||||| Sbjct 27230 ACGAAAATCTGCATG 27216 >seq55116 Length=591887 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTC-GCT 138446 || |||| |||||| | ||| || || | | | || || || || ||||| || || ||| Sbjct 230427 CCACCTCTCAAACGTAGAACCAAGTGGAGGGTGGATTCTTTCTGGATGTTATAATCAGCT 230486 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 | ||| || ||||||||||| || || | | |||| || | ||| ||||| || || Sbjct 230487 -AGAGTTCGGCCATCCTCGAGTTGCTTTCCAGCAAAGATAAGCCTCTGCTGGTCTGGGGG 230545 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || || || ||||| |||||| ||| | | || | || || | |||||| Sbjct 230546 AATTCCCTCCTTGTCCTGTATTTTTGCTTTGACGTTATCAATAGTATCAGAGCTCTCCAC 230605 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||||| || | || || ||||| ||||| || ||||| |||||||| Sbjct 230606 CTCGAGAGTTATGGTCTTTCCAGTAAGAGTCTTGACAAAGATCTGCAT 230653 >seq1025 Length=2429094 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || ||||||||||||| || || || | | || ||||||||||| ||||| ||| Sbjct 1182371 CCTCCTCGCAAACGCAGCACCAAGTGCAAAGTCGATTCCTTTTGAATATTGTAATCGGCT 1182312 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || ||||| | || || || | | | || | | ||| ||||| || || Sbjct 1182311 AAGGTCCGTCCATCCTCTAACTGCTTGCCAGCAAAAATCAACCTCTGCTGGTCTGGTGGG 1182252 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 |||||||||||||| ||| | || | || | | || | ||| |||| ||| || Sbjct 1182251 ATACCTTCTTTGTC-TTGAATCTTAGCCTTCACATTATCAATGGTATCGGAGCTCTCAAC 1182193 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||| | || | ||||| ||||||| || || |||||||||||||| Sbjct 1182192 CTCCAAAGTAATGGTTTTTCCAGTCAAGGTCTTGACAAAAATCTGCAT 1182145 Score = 84.2 bits (92), Expect = 2e-11 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || |||| |||| || | ||| | | | |||||||| ||||| ||||| || Sbjct 1182599 CCACCACGCAGGCGCAGCACCAGATGAAGGGTAGACTCCTTCTGAATATTGTAATCTGCA 1182540 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||| | | ||| || || || || || | | |||| || | || || || || || Sbjct 1182539 AGAGTCCTCCCGTCTTCAAGCTGCTTGCCTGCAAAGATAAGCCTTTGCTGATCTGGTGGA 1182480 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTG--TTTTAATTGTTCCACGGTGTCGGTCGACTCCA 138565 |||||||||||||| ||| | || | || |||| || | ||||| | ||| | Sbjct 1182479 ATACCTTCTTTGTC-CTGAATCTTCGCCTTGACATTG-TCAATTGTGTCCGAACTCTCGA 1182422 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||| | || | ||||| || |||||||| || |||||||||||||| Sbjct 1182421 CCTCCAATGTAATGGTTTTTCCGGTCAGAGTCTTCACAAAAATCTGCAT 1182373 >seq1014 Length=2264649 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || ||||| |||| || | ||||| | | || ||||| ||||| ||||| || Sbjct 109733 CCACCACGCAAGCGCAGCACCAGATGTAGGGTAGATTCCTTCTGAATATTGTAATCTGCA 109674 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||| | | || || || || || || | | |||| || | || ||||| ||||| Sbjct 109673 AGAGTCCTCCCATCTTCTAGCTGCTTGCCTGCAAAGATAAGCCTTTGCTGGTCTGGAGGG 109614 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || || |||||||| || ||| || | ||||| | | || || | || || Sbjct 109613 ATGCCCTCTTTGTCCTGTATCTTTGCCTTGACATTGT-CGATTGTATCCGAACTTTCAAC 109555 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||||| || | ||||||||||||| ||| || |||||||||||||| Sbjct 109554 CTCGAGAGTTATGGTTTTACCAGTCAAAGTCTTCACAAAAATCTGCAT 109507 >seq1533 Length=248107 Score = 82.4 bits (90), Expect = 8e-11 Identities = 138/197 (70%), Gaps = 2/197 (1%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||||||| | ||| || |||||||| ||||| || | Sbjct 240002 GACTCCTTCTGTATGTTGTAGTCGGCTAAAGTTCGGCCATCCTCGAGCTGTTTCCCAGCG 239943 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-A 138539 |||| || ||||| || ||||| || || || || || || ||| || || | | Sbjct 239942 AAGATGAGGCGCTGCTGATCCGGCGGGATGCCCTCCTTATCTTGGATCTTGGCCTTGACA 239883 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 ||| || | ||| || | ||||| ||||| | || | || || || || || ||||| Sbjct 239882 TTG-TCGATGGTATCCGAGGACTCGACCTCTAGGGTTATGGTCTTCCCCGTTAGGGTTTT 239824 Query 138600 TACAAAAATCTGCATGG 138616 || || |||||||||| Sbjct 239823 CACGAAGATCTGCATGG 239807 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495606074366160