Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Juglans_20regia_20[refseq_20GCF_5F001411555.1_202015-10-22] 105,803 sequences; 699,672,627 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq1014 116 3e-21 seq1025 98.7 7e-16 seq55116 89.7 4e-13 seq1868 89.7 4e-13 >seq1014 Length=2264649 Score = 116 bits (128), Expect = 3e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| |||| | | || || || | ||| || || || || ||||| || || Sbjct 109277 CCACCACGCAGCCGAAGCACCAAGTGCAAGGTGGACTCCTTCTGAATGTTATAGTCAGCA 109218 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 ||| | || | ||||||| ||| || ||||| | ||||| | ||| ||||| ||| Sbjct 109217 AGAGTCCTTCCATCTTCTAGTTGCTTCCCAGCAAAAATCAACCTCTGCTGGTCTGGTGGG 109158 Query 15070 ATTCCTTCCTTGTCACAAAT-TTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTAC 15128 ||||| |||||||| ||| ||||| || ||| | ||||||||||| |||| || Sbjct 109157 ATTCCCTCCTTGTCCTGAATCTTTGCCTTC-ACATTGTCTATAGTATCCGAGCTTTCAAC 109099 Query 15129 GTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || ||||| || ||||| |||||||| || || |||||||||||||| Sbjct 109098 TTCCAAGGTTATAGTTTTTCCTGTCAGCGTCTTCACAAAAATTTGCAT 109051 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATC-GCT 15008 || || ||||| | | || || || || || || || ||||| || |||||||| ||| Sbjct 109505 CCGCCACGCAAACGCAGCACCAAGTGCAGTGTCGATTCCTTTTGGATATTGTAATCTGCT 109446 Query 15009 GAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGG 15068 || | || | |||||||| || |||||||| | ||||| | ||| ||||| ||| Sbjct 109445 AAGG-TCCTTCCATCTTCTAACTGCTTGCCAGCAAAAATCAACCTCTGCTGGTCAGGTGG 109387 Query 15069 AATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTAC 15128 || ||||| ||||| |||||| || ||| | || ||||||||| | | || || Sbjct 109386 GATACCTTCTTTGTCTTGAATTTTAGCCTTCACATTATCAATAGTATCGGAACTCTCAAC 109327 Query 15129 GTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || ||||||||||| || |||| || || || ||||| ||||| Sbjct 109326 CTCCAAAGTAATGGTTTTTCCAGTCAAGGTCTTAACGAAAATCTGCAT 109279 Score = 98.7 bits (108), Expect = 7e-16 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 14980 GTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGTTTGCCA 15039 ||||| || ||||| ||||||||||| ||| | ||| | ||||| | ||||| || Sbjct 109931 GTAGACTCCTTTTGGATGTTGTAATCCGCCAGAGTCCTCCCATCTTCAAGCTGTTTCCCC 109872 Query 15040 GCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAAT-TTTGCTTTT 15098 ||| | || | | ||| || || || |||||||||||||| ||| |||||||| Sbjct 109871 GCGAAGATAAGCCTCTGCTGATCCGGAGGGATTCCTTCCTTGTCCTGAATCTTTGCTTTC 109812 Query 15099 TACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTCAGAGT 15158 ||| | || || || || | | ||||| || ||||||||||| || || |||| || Sbjct 109811 -ACATTATCAATCGTGTCAGAACTCTCTACCTCCAAGGTAATGGTCTTCCCAGTCAATGT 109753 Query 15159 TTTTACAAAAATTTGCAT 15176 || ||||| || ||||| Sbjct 109752 CTTCACAAATATCTGCAT 109735 Score = 89.7 bits (98), Expect = 4e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| ||||| | | || | ||| |||||||| || || || || |||||||| Sbjct 109733 CCACCACGCAAGCGCAGCACCAGATGTAGGGTAGATTCCTTCTGAATATTGTAATCTGCA 109674 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 ||| | ||| | ||||||| || ||||| || | || | | || ||||| || Sbjct 109673 AGAGTCCTCCCATCTTCTAGCTGCTTGCCTGCAAAGATAAGCCTTTGCTGGTCTGGAGGG 109614 Query 15070 ATTCCTTCCTTGTCACAAAT-TTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTAC 15128 || || || ||||| || ||||| || ||| | || || ||||| | |||| || Sbjct 109613 ATGCCCTCTTTGTCCTGTATCTTTGCCTTG-ACATTGTCGATTGTATCCGAACTTTCAAC 109555 Query 15129 GTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || | || ||||||||||| |||| ||| || |||||||| ||||| Sbjct 109554 CTCGAGAGTTATGGTTTTACCAGTCAAAGTCTTCACAAAAATCTGCAT 109507 >seq1025 Length=2429094 Score = 98.7 bits (108), Expect = 7e-16 Identities = 150/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 || ||||| | ||| || || || || |||||||||||| | | || | |||||| Sbjct 1182125 ACCAAATGCAAGGTGGACTCCTTCTGAATGTTGTAATCGGCTAATGTCCTTCCATCTTCT 1182066 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 ||||| || ||||| | ||||| | ||| || || ||| || || |||||||| Sbjct 1182065 AATTGCTTCCCAGCAAAGATCAACCTCTGCTGATCCGGTGGGATACCCTCCTTGTCTTGG 1182006 Query 15088 AT-TTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTT 15146 || ||||| || ||| | ||||| ||||| |||| || || ||||| || ||||| Sbjct 1182005 ATCTTTGC-CTTGACATTATCTATGGTATCCGAGCTTTCAACTTCCAAGGTTATAGTTTT 1181947 Query 15147 ACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || |||| || || ||||| ||||||||| Sbjct 1181946 TCCCGTCAAGGTCTTCACAAAGATTTGCATA 1181916 Score = 98.7 bits (108), Expect = 7e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| |||| | | || | |||||||||||| || || || || |||||||| Sbjct 1182599 CCACCACGCAGGCGCAGCACCAGATGAAGGGTAGACTCCTTCTGAATATTGTAATCTGCA 1182540 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 ||| | ||| ||||||| | || ||||| || | || | | || || || |||| Sbjct 1182539 AGAGTCCTCCCGTCTTCAAGCTGCTTGCCTGCAAAGATAAGCCTTTGCTGATCTGGTGGA 1182480 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || ||||| ||||| ||| || || ||| | || || || || | | || || Sbjct 1182479 ATACCTTCTTTGTCCTGAATCTTCGCCTTGACATTGTCAATTGTGTCCGAACTCTCGACC 1182420 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || ||||||||||| || |||||||| || |||||||| ||||| Sbjct 1182419 TCCAATGTAATGGTTTTTCCGGTCAGAGTCTTCACAAAAATCTGCAT 1182373 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCG-CT 15008 || |||||||| | | || || || | || || || ||||| || ||||||||| || Sbjct 1182371 CCTCCTCGCAAACGCAGCACCAAGTGCAAAGTCGATTCCTTTTGAATATTGTAATCGGCT 1182312 Query 15009 GAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGG 15068 || || | || ||||| || |||||||| | ||||| | ||| ||||| ||| Sbjct 1182311 AAGGTCCGTC-CATCCTCTAACTGCTTGCCAGCAAAAATCAACCTCTGCTGGTCTGGTGG 1182253 Query 15069 AATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTAC 15128 || ||||| ||||| ||| || || ||| | || || |||||| | || || Sbjct 1182252 GATACCTTCTTTGTCTTGAATCTTAGCCTTCACATTATCAATGGTATCGGAGCTCTCAAC 1182193 Query 15129 GTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || ||||||||||| || |||| || || |||||||| ||||| Sbjct 1182192 CTCCAAAGTAATGGTTTTTCCAGTCAAGGTCTTGACAAAAATCTGCAT 1182145 Score = 82.4 bits (90), Expect = 5e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 || || || ||||| || || ||||| ||||||||||| || | | ||||||| Sbjct 1181897 ACCAAGTGGAGGGTTGATTCCTTTTGGATGTTGTAATCCGCAAGGGTCCGACCGTCTTCG 1181838 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 | || || ||||| | || | | ||| ||||| ||| || || |||||||| Sbjct 1181837 AGCTGCTTTCCAGCAAAGATAAGCCTCTGCTGGTCTGGTGGGATACCCTCCTTGTCTTGG 1181778 Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147 || || || ||| | || ||||| || |||| || || || || |||||||| Sbjct 1181777 ATCTTAGCCTTGACATTATCAATAGTGTCCGAGCTTTCGACCTCCAAAGTTATGGTTTTT 1181718 Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || || || ||||| ||||| ||||||||| Sbjct 1181717 CCAGTAAGGGTTTTAACAAAGATTTGCATA 1181688 Score = 82.4 bits (90), Expect = 5e-11 Identities = 142/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033 || || || || || || ||||| |||||||| ||| | || | ||||| | ||| Sbjct 1182803 TGCAGAGTGGACTCCTTCTGTATATTGTAATCCGCCAGAGTCCTTCCATCTTCAAGCTGT 1182744 Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAAT-TTT 15092 || || || | || | | ||| || || || |||||||| ||||| ||| ||| Sbjct 1182743 TTACCCGCAAAGATAAGCCTCTGCTGATCTGGAGGTATTCCTTCTTTGTCCTGAATCTTT 1182684 Query 15093 GCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGT 15152 ||||| ||| | || || ||||| | | || || || ||||||||||| || || || Sbjct 1182683 GCTTTC-ACATTATCAATTGTATCAGAACTCTCGACCTCCAAGGTAATGGTCTTCCCAGT 1182625 Query 15153 CAGAGTTTTTACAAAAATTTGCAT 15176 || ||||| ||||| || ||||| Sbjct 1182624 CAATGTTTTCACAAAGATCTGCAT 1182601 >seq55116 Length=591887 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| || | || | || |||||||| ||||| ||||| || ||||||||||| Sbjct 229743 CCACCGCGAAGCCTGAGGACCAAATGAAGAGTAGACTCTTTCTGGATGTTGTAATCAGCC 229802 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 | | || | || || | ||| || ||||| ||||||| | ||| |||||| ||| Sbjct 229803 AATGTCCTGCCATCCTCAAGTTGCTTTCCAGCAAATATCAACCTCTGCTGGTCGGGAGGA 229862 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || |||||||| || |||||| || ||| | || || ||||| | || || Sbjct 229863 ATGCCTTCCTTATCCTGAATTTTCGCCTTCACATTGTCAATTGTATCAGAGCTCTCAACC 229922 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || | || || || || || || || || || ||||| |||||||| Sbjct 229923 TCCAGAGTTATAGTCTTTCCAGTAAGGGTCTTGACAAAGATTTGCAT 229969 >seq1868 Length=298818 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 14973 ATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTG 15032 |||||| || || || || || || ||||| ||| ||| | | |||| || || || Sbjct 223902 ATGAAGCGTGGACTCCTTCTGGATATTGTAGTCGGCGAGGGTGCGACCGTCCTCCAACTG 223843 Query 15033 TTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTT 15092 || |||||| | ||||||||||| || ||| || || ||||||||||| || || Sbjct 223842 CTTCCCAGCGAAGATCAAACGCTGCTGATCGGGAGGGATACCTTCCTTGTCCTGGATCTT 223783 Query 15093 GCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGT 15152 | || || | ||||| || ||| | | || || || | ||| ||||| || || || Sbjct 223782 GGCCTTGACGTTGTCTATGGTGTCGGAACTCTCGACCTCGAGGGTGATGGTCTTCCCGGT 223723 Query 15153 CAGAGTTTTTACAAAAATTTGCAT 15176 || ||||| || || || ||||| Sbjct 223722 GAGGGTTTTGACGAAGATCTGCAT 223699 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 356931152285855