Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Juglans_20regia_20[refseq_20GCF_5F001411555.1_202015-10-22] 105,803 sequences; 699,672,627 total letters Query= NC_013085.1 Length=194454 Score E Sequences producing significant alignments: (Bits) Value seq1861 389 5e-103 seq47040 168 8e-37 seq54963 163 4e-35 >seq1861 Length=68153 Score = 389 bits (430), Expect = 5e-103 Identities = 674/976 (69%), Gaps = 14/976 (1%) Strand=Plus/Minus Query 6301 AAAGTTTTCATGTGGTTGATCCACTGGTGCCATCCAGGCACGTAGACCTTCATTCAATAG 6360 |||||||||||| || ||||| | ||||||| ||| | | ||||||||| || || Sbjct 27911 AAAGTTTTCATGAGGCTGATCTTGAGCCTCCATCCAAGCATGAATACCTTCATTTAAAAG 27852 Query 6361 GATGTTCTTGGTATAGAACGTCTCGAACTCTGGATCCTCCGCTGCTCTGATCTCTTGTGA 6420 || || || || ||||| ||||| || || ||||| || |||| | ||| || || || Sbjct 27851 AATATTTTTTGTGTAGAAAGTCTCAAATTCAGGATCTTCTACTGCACGGATTTCCTGAGA 27792 Query 6421 AACAAAGTCATAAGCTCTAAGGTTAAGTGCAAGACCAATAATACCAATGCTAGAGGTCCA 6480 |||||||||||| || | ||||| || || ||||| | | |||| | |||| Sbjct 27791 AACAAAGTCATAGGCACGTAGGTTCAGAGCCAGACCGACTACTCCAAGAGCACTCATCCA 27732 Query 6481 AAGACCCATAACAGGAACAAACAGCATAAAGAAATGTAGCCAACGCTTATTGCTGAAGGC 6540 | || | || | ||||| ||||||| |||||||| |||||| |||||| || | Sbjct 27731 TAAACTGGTTACTAGTACAAATAGCATAAGGAAATGTAACCAACGTTTATTGGAAAAAGT 27672 Query 6541 GATACCAAAGATCTGAGACCAGAAACGATTAGCCGTGACCATCGAATAGGTCTCCTCTTC 6600 | |||||||| || ||||| || | ||||| |||||||| ||||| || || || | Sbjct 27671 AACCCCAAAGATTTGGGACCAAAAGTGGTTAGCGGTGACCATTGAATAAGTTTCTTCAGC 27612 Query 6601 TTGTGTAGGCTCAAACGCCTTGAAAGTATTTGATTGTTCACCATCTTCAAACAAAGTATT 6660 ||| || || | ||| || || ||||||| |||||||||||||| |||||| | Sbjct 27611 TTGAGTTGGGTTAAAAGCACAAAATGTATTTGCACCATCACCATCTTCAAATAAAGTACT 27552 Query 6661 CTCTACAGTAGCACCGTGAATAGCACAGAGCAATGCTCCACCTAAGATACCTGCTACACC 6720 |||| |||||||| |||||| | || |||| || | || | | ||| || || || Sbjct 27551 TTCTAAGGTAGCACCATGAATAACGCATAGCAGAGCAGCGCCAATTACACCAGCAACCCC 27492 Query 6721 CATCATATGAAACGGGTTGAGCGTCCAGTTGTGGAAGCCCTGTAGGAAGAGTAAGAAGCG 6780 |||||||||||| ||||| | ||||| || || || || | | ||||| ||||| | Sbjct 27491 CATCATATGAAATGGGTTCAATGTCCAATTATGAAACCCTTAGAAAAAGAGAAAGAA-TG 27433 Query 6781 GAATATCGCTGCAACACCAAACGACGGCGCAAAGAACCAACTGGACTGTCCGAGAGGATA 6840 ||||| ||||| |||||||| ||| |||||||||||| || || || || |||| Sbjct 27432 AAATATAGCTGCTACACCAAAGCTAGGCACAAAGAACCAACCCGATTGACCTAGTAGATA 27373 Query 6841 CATGAGAAAGACAGACACAAAGACAGCAATGGGACCAGAAAACGCGATTGCATTGTAGGG 6900 || || || || | | ||| | |||||| ||| |||| || ||||||||||| || || Sbjct 27372 AATCAGCAATACCAAAAAAAAAAAAGCAATTGGAGCAGAGAATGCGATTGCATTATAAGG 27313 Query 6901 ACGAATACCGACTAGA-CGTGCGATCTCAAACTGCCGAAGCATGAAACCTATAAGGGCAA 6959 || | | || ||| || || | ||||||| || | | ||| |||||| || Sbjct 27312 TCGCA-ATTGAACAGATCGAGCAAGTTCAAACTAACGTAACGTGAGACCTATTAG----- 27259 Query 6960 AGGCTCCGTGGAGCGCCACAAAAGGCCATAGTCCCCCAAGTTGGAGCCAGCGGACGAAAT 7019 ||| ||| || ||||||| ||| || | || | ||| ||| | |||| Sbjct 27258 ----TCC--AGAGAGCAACAAAAGTCCACAGACTACCTAATTGACACCAACAAGTAAAAT 27205 Query 7020 CTCCCTGAGCTTCTGGACCCCATAGAAGAAGTAGGGAATGTCCGAGAGCGTCAGCAGGAG 7079 |||| || | ||||||||||||||| | | | || ||| | | | | ||| ||| Sbjct 27204 CTCCTTGTGTTTCTGGACCCCATAGTAACAACAAAGAGTGTGCTAAACTATTAGCGAGAG 27145 Query 7080 TTGATACAGCAGCAGTAAGGAAATTACATCCCTCAAGATACGAAGAAGCAATCCCGTGAG 7139 | || || ||||| || | ||| || || || || | ||| ||| || | ||||| | Sbjct 27144 TAGAAACTGCAGCGGTTAAGAAGTTGCAGCCTTCCAAATAGGAACTCGCCAATCCGTGTG 27085 Query 7140 TGTACCAGCTCGTGACGAAAGTTGTGCCCGTGAGCCAACCGCCCAGTGCCAGGTAAGCAG 7199 | ||| | || || || ||||| || || | |||||| || | || | || ||| Sbjct 27084 TATACTATGAAGTTACAAAGGTTGTACCTGTAAACCAACCCCCTAAGGCAAAATAGGCAC 27025 Query 7200 TAGGGAACAGAAGAAGACCTGACCAACCAACAAAAACGAACCTATCACGCTTAAGCCAGT 7259 ||| || || | ||||| |||||||| ||||||||||| || | | | ||||| Sbjct 27024 AAGGAAAGAGTAATAGACCGGACCAACCTACAAAAACGAAATGGTCCCTCCGTAACCAGT 26965 Query 7260 CATCGAGTACATCAAA 7275 |||| | | |||||| Sbjct 26964 CATCCATAATATCAAA 26949 >seq47040 Length=8764 Score = 168 bits (186), Expect = 8e-37 Identities = 168/218 (77%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 7919 GAACCATGCATCGCACTGAACAGAGAACCACCAAAGACACCAGCGACGCCCAGCATGTGG 7978 ||||||||||| ||||| || || | || || || |||||||| || || | ||| || Sbjct 5470 GAACCATGCATAGCACTAAATAGGAAGCCGCCGAATACACCAGCTACACCTAACATATGA 5529 Query 7979 AAGGGGTGCATCAGGATGTTGTGCTCTGCTTGGAAGACAAGCATGTAGTTGAACGTACCA 8038 || |||||||| |||||||||||||| || ||||| |||| |||| ||||||| |||||| Sbjct 5530 AATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAATACAATCATGAAGTTGAAAGTACCA 5589 Query 8039 GAGATGCCAAGAGGCATAGCGTCAGAGAAAGAACCTTGACCGAAAGGATAGACGAGGAAT 8098 || || || |||||| || ||| ||| || |||||||| | ||||||| | ||| Sbjct 5590 GAAATTCCTAGAGGCTTACCGTGAGAAAAGCTTCCTTGACCAATTGGATAGATCAAGAAA 5649 Query 8099 ACAGCAGATGCTGCAGCAACTGGAGCAGAGTATGCTAC 8136 |||| || || || ||||| ||||| || ||||| || Sbjct 5650 ACAGTAGTAGCAGCTGCAACAGGAGCTGAATATGCAAC 5687 >seq54963 Length=251348 Score = 163 bits (180), Expect = 4e-35 Identities = 167/218 (77%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 7919 GAACCATGCATCGCACTGAACAGAGAACCACCAAAGACACCAGCGACGCCCAGCATGTGG 7978 ||||||||||| |||| || || || || || || |||||| || | | |||||| Sbjct 117410 GAACCATGCATAACACTAAATAGGGAGCCGCCGAATACACCAATTACACGTAACATGTGA 117351 Query 7979 AAGGGGTGCATCAGGATGTTGTGCTCTGCTTGGAAGACAAGCATGTAGTTGAACGTACCA 8038 || |||||||| |||||||||||||| || ||||| |||| |||| ||||||| |||||| Sbjct 117350 AATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAATACAATCATGAAGTTGAAAGTACCA 117291 Query 8039 GAGATGCCAAGAGGCATAGCGTCAGAGAAAGAACCTTGACCGAAAGGATAGACGAGGAAT 8098 || || || ||||||||| ||||||| || |||||||| | ||||||| | || Sbjct 117290 GAAATTCCTAGAGGCATACCGTCAGAAAAGCTTCCTTGACCAATTGGATAGATCAATAAA 117231 Query 8099 ACAGCAGATGCTGCAGCAACTGGAGCAGAGTATGCTAC 8136 ||||||| || || |||| ||||| || ||||| || Sbjct 117230 ACAGCAGTAGCAGCTACAACAGGAGCTGAATATGCAAC 117193 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 621302016622320