Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Juglans_20regia_20[refseq_20GCF_5F001411555.1_202015-10-22] 105,803 sequences; 699,672,627 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq50617 143 3e-29 seq54992 136 5e-27 seq51103 113 6e-20 seq48769 100 3e-16 seq1321 91.5 2e-13 seq1182 91.5 2e-13 >seq50617 Length=115889 Score = 143 bits (158), Expect = 3e-29 Identities = 192/265 (72%), Gaps = 13/265 (5%) Strand=Plus/Minus Query 127532 TGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCC 127591 || || ||||||||||||||||| || || || |||||| ||||| ||||| | || Sbjct 92415 TGCAGCCCCTCGTCACGGGAGATCAGCTCGTTGGAGAAGGTGAGACCAGGCATCAACCCG 92356 Query 127592 CGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACAC 127651 ||||| ||||||||||| || || || || || |||||||||||||| || || ||| Sbjct 92355 CGCTTTTTCAACCAGAATATGGCGCAGAAGCTTCCGGAGAAGAAGATCCCTTCGACGCAC 92296 Query 127652 GCGAACGCAAATAGACGCTCGGCAAAGGA--GCGGGACTTTGTATCAAACCACTTCATCG 127709 ||||| || | |||||||| |||||||| || | | || | ||| || | Sbjct 92295 GCGAAGGCGATGAGACGCTCCGCAAAGGACTCCGAGCC-----GTCGATCCAGCGCAGGG 92241 Query 127710 CCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCAAAGA---GTTCCT 127766 ||||||| ||||| || | | ||| |||||||||| ||| || | |||| | | || Sbjct 92240 CCCACTGGGCCTTCTTAGCCACACAGGGGACGGTCTCGATGGCATGGAAGAGGCGGTGCT 92181 Query 127767 TCTTTTCTGATGGATCTTTGATGTA 127791 ||| ||||| ||| |||||||| Sbjct 92180 TCTCATCTGA---ATCCTTGATGTA 92159 >seq54992 Length=480207 Score = 136 bits (150), Expect = 5e-27 Identities = 169/231 (73%), Gaps = 3/231 (1%) Strand=Plus/Plus Query 127531 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 127590 |||||| |||||||| || ||||| || || || |||||| |||||| ||||| | || Sbjct 460099 GTGGAGCCCCTCGTCTCGCGAGATCAGCTCGTTGGAGAAGGTCAGACCGGGCATCAAGCC 460158 Query 127591 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACA 127650 ||||||||||||||||| || || || || || ||||||||||| || || ||||| Sbjct 460159 GCGCTTCTTCAACCAGAAGATGGCGCAGAAGCTTCCGGAGAAGAAGATACCTTCTACACA 460218 Query 127651 CGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGTATCAAACCACTTCATCGC 127710 |||||| || | | ||||| || ||||| || | || | ||| || || Sbjct 460219 CGCGAAAGCGACGATGCGCTCAGCGAAGGACTCGGCC---CCGTCGATCCAGCGCAGGGC 460275 Query 127711 CCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCAAAGAG 127761 |||||||||||| || ||| || |||||||||| ||| || | ||||| Sbjct 460276 CCACTGTGCCTTCTTAGCGACGCAAGGGACGGTCTCGATGGCGTGGAAGAG 460326 >seq51103 Length=109835 Score = 113 bits (124), Expect = 6e-20 Identities = 244/356 (69%), Gaps = 17/356 (5%) Strand=Plus/Minus Query 10500 GACGCCCTTCTATCCACGATCCGTCTATG--GCGTCTCAAAGGTTGCGGCACATTGGCTC 10557 |||||| ||| |||| |||||| || | ||||| |||| | || || |||||| | Sbjct 21342 GACGCCGTTCCATCCCCGATCCCCATACGCCGCGTC-CAAATGC-GCCGCGCATTGGTAC 21285 Query 10558 GTGAAGAATTATCGCGAATCCTATGGTCTCTTTGTGTGCTCCGGTATTCTCTTCAACCAC 10617 | ||| || ||||| | ||||| | | || |||| || || |||||||| ||| Sbjct 21284 ACGGTGAACTACCGCGAGGCGTATGGGATATATGCGTGCAATGGGATACTCTTCAATCAC 21225 Query 10618 GAGTCACCCCGTCGTGGCCCGGATTTCGTGACAAAGAAGATCAC-----CGATGGTATCA 10672 ||||| || || || ||| | | |||||||| | ||||||||| || ||| | Sbjct 21224 GAGTCGCCGCGGCGGGGCGAGAACTTCGTGACGAGGAAGATCACGCGTGCGGTGGGACGG 21165 Query 10673 AACAA-ATCGTGGCGGGTGAGAGGGAGTTCATTGAATTGGGGAACCTCAACGCCGAGAGG 10731 | ||| |||| || | || || || | | ||||| |||| |||| ||| Sbjct 21164 ATCAAGATCG--GCCTCCAA-AGCAAGCTCTTCC---TTGGGAATCTCAGCGCCTCCAGG 21111 Query 10732 GACTGGGGACACGCCAAGGACTATGTTGAAGCCATGTGGCTCGTACTCCAACAAGAAGAG 10791 ||||||||| |||| |||||| || || || |||||| | | || || ||||| || Sbjct 21110 GACTGGGGATTCGCCGGGGACTACGTGGAGGCAATGTGGATGATGCTGCAGCAAGACAAG 21051 Query 10792 GCGGACGAATATGTCGTCGCGACGGGGGAGACACACTCCGTCAGGGAGTTCGTTGA 10847 ||||||| || || || ||||||| |||| | ||| | || ||||||| |||| Sbjct 21050 CCGGACGACTACGTGGTTGCGACGGAGGAGTCGCACACGGTGGAGGAGTTC-TTGA 20996 >seq48769 Length=5169 Score = 100 bits (110), Expect = 3e-16 Identities = 200/291 (69%), Gaps = 13/291 (4%) Strand=Plus/Minus Query 10563 GAATTATCGCGAATCCTATGGTCTCTTTGTGTGCTCCGGTATTCTCTTCAACCACGAGTC 10622 ||| || ||||| | ||||| | | || |||| || || |||||||| |||||||| Sbjct 5123 GAACTACCGCGAGGCGTATGGGATATATGCGTGCAATGGGATACTCTTCAATCACGAGTC 5064 Query 10623 ACCCCGTCGTGGCCCGGATTTCGTGACAAAGAAGATCAC-----CGATGGTATCAAACAA 10677 || || || ||| | | |||||||| | ||||||||| || ||| | | ||| Sbjct 5063 GCCGCGGCGGGGCGAGAACTTCGTGACGAGGAAGATCACGCGTGCGGTGGGACGGATCAA 5004 Query 10678 -ATCGTGGCGGGTGAGAGGGAGTTCATTGAATTGGGGAACCTCAACGCCGAGAGGGACTG 10736 |||| || | || || || | | ||||| |||| |||| |||||||| Sbjct 5003 GATCG--GCCTCCAA-AGCAAGCTCTTCC---TTGGGAATCTCAGCGCCTCCAGGGACTG 4950 Query 10737 GGGACACGCCAAGGACTATGTTGAAGCCATGTGGCTCGTACTCCAACAAGAAGAGGCGGA 10796 |||| |||| |||||| || || || |||||| | | || || ||||| || |||| Sbjct 4949 GGGATTCGCCGGGGACTACGTGGAGGCAATGTGGATGATGCTGCAGCAAGACAAGCCGGA 4890 Query 10797 CGAATATGTCGTCGCGACGGGGGAGACACACTCCGTCAGGGAGTTCGTTGA 10847 ||| || || || ||||||| |||| | ||| | || ||||||| |||| Sbjct 4889 CGACTACGTGGTTGCGACGGAGGAGTCGCACACGGTGGAGGAGTTC-TTGA 4840 >seq1321 Length=289959 Score = 91.5 bits (100), Expect = 2e-13 Identities = 253/381 (66%), Gaps = 8/381 (2%) Strand=Plus/Minus Query 12792 AAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCACGTTCATCATTCGCGGGC 12851 || ||||||||||| ||||| || || ||||| ||||| || | ||||||||| | | Sbjct 178807 AACCCATCCATCTCCGTCAACAGCTGGTTGATAGTTTGCTCCCTCTCATCATTCCC--AC 178750 Query 12852 ATACCA--CCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCGTCAATGAAAACGATAC 12909 | | | ||||| | | ||| | || ||||| ||||| ||||| ||||| || || | Sbjct 178749 CTCCAAGTCCCGCCCCTCTCTGCCTCCCTACGGCATCAATCTCGTCTATGAACACAATGC 178690 Query 12910 ACGGTTGATTTTCAC-GGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCC 12968 |||| | ||| || || ||| || | || | ||||||| || || || || Sbjct 178689 ACGG-CGCTTTAGACTTTGCCTTTTCGAACAAGTCCCTCACTCTCGAAGCCCCAACTCCA 178631 Query 12969 ACAAACATCTCCACAAAATTGGCGGCGGAACATTGGATGAAGGGGACGTTGGATTCACCC 13028 ||||||| |||||||| | | || | ||| || ||| || ||| | ||| || Sbjct 178630 ACAAACAATTCCACAAACTCCGAAGCCGCACACGAGAAGAATGGCACGCCAGCTTCCCCT 178571 Query 13029 GCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGGTTTCCCCGCGAGAAGGGCACCA 13088 || | |||| ||| | || ||||| || || || || ||| | || | || Sbjct 178570 GCTACCGCTCTGGCCAATAGAGTCTTACCGGTACCGGGCGGTCCCACCAGCAAACATCCC 178511 Query 13089 CGTGGGATCCTGGCACCACTTCCAAAGTAGCGCTC-GGGTTGTTTAAGAAAGTCCACGAT 13147 |||||| |||| || || ||| || ||||| || |||||| || |||| Sbjct 178510 TTTGGGATTTTGGCTCCCAGGGCAGTGTACTTATCTGGGTTTTTCAAGAAA-TCAACGAC 178452 Query 13148 TTCTTCCAATTCATCCTTCGC 13168 ||||| ||||||| |||||| Sbjct 178451 TTCTTGCAATTCAAGCTTCGC 178431 >seq1182 Length=383271 Score = 91.5 bits (100), Expect = 2e-13 Identities = 253/381 (66%), Gaps = 8/381 (2%) Strand=Plus/Minus Query 12792 AAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCACGTTCATCATTCGCGGGC 12851 || ||||||||||| |||||||| || ||||| ||||| || | ||||||||| | | Sbjct 49770 AACCCATCCATCTCCGTCAAGAGCTGGTTGATAGTTTGCTCCCTCTCATCATTCCC--AC 49713 Query 12852 ATACCA--CCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCGTCAATGAAAACGATAC 12909 | | | ||||| | | ||| | || || || ||||| || || ||||| || || | Sbjct 49712 CTCCAAGCCCCGCCCCTCTCTGCCTCCCCACCGCATCAATCTCATCGATGAACACAATGC 49653 Query 12910 ACGGTTGATTTTCAC-GGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCC 12968 |||| | ||| || ||| || || | || | ||||||| || || || ||| Sbjct 49652 ACGG-CGCTTTCGACTTGGCTTTCTCGAACAAGTCCCTCACTCTCGAAGCCCCAACTCCC 49594 Query 12969 ACAAACATCTCCACAAAATTGGCGGCGGAACATTGGATGAAGGGGACGTTGGATTCACCC 13028 ||||||| |||||||| | | |||| ||| || ||| || ||| | || || Sbjct 49593 ACAAACAATTCCACAAACTCCGAAGCGGCACACGAGAAGAATGGCACGCCTGCCTCGCCT 49534 Query 13029 GCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGGTTTCCCCGCGAGAAGGGCACCA 13088 | || |||| || | ||||||||||| || || || ||| | || | | || Sbjct 49533 GAGACTGCTCTTGCCAATAGGGTCTTCCCAGTACCGGGGGGTCCCACAAGCAAGCACCCT 49474 Query 13089 CGTGGGATCCTGGCACCACTTCCAAAGTAGCGCTC-GGGTTGTTTAAGAAAGTCCACGAT 13147 |||||| | || || || || || ||||| || |||||| || |||| Sbjct 49473 TTTGGGATTTTAGCTCCCAGGGCAGTATACTTATCTGGGTTTTTCAAGAAA-TCAACGAC 49415 Query 13148 TTCTTCCAATTCATCCTTCGC 13168 ||||| ||||||| |||||| Sbjct 49414 TTCTTGCAATTCAAGCTTCGC 49394 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 612695813721480