Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Juglans_20regia_20[refseq_20GCF_5F001411555.1_202015-10-22] 105,803 sequences; 699,672,627 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq50617 168 1e-36 seq54992 140 5e-28 >seq50617 Length=115889 Score = 168 bits (186), Expect = 1e-36 Identities = 484/738 (66%), Gaps = 16/738 (2%) Strand=Plus/Minus Query 159648 TCTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAATGGGT 159707 |||| ||||| || |||||||| || | || || || ||||| | | || |||| Sbjct 92702 TCTTTTCGAAGAAATTGGTCTTCCCTTGCAACGAGATCAGCTCCATCCAATCAAACGGGT 92643 Query 159708 TCTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACAAATT 159767 ||| || | ||| ||| |||||| || ||| | ||| || ||||| || | Sbjct 92642 TCTGAACATTGTAGATCTTTCCGCATCCGAACGCGCCCAAGAGCCTATCGGCCACGAACT 92583 Query 159768 CGATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCGCTTCCG 159827 ||||||| | |||| | || | ||| ||||||| || | || ||||| || Sbjct 92582 CGATGTACTGGCTCATCAGATCTCCGTTCATCCCCACCAACGCGCATGGTAGCGCGTCGC 92523 Query 159828 ACAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTGCGAGACACGTTCGTACC 159887 ||| |||||| |||| ||||| ||||| ||| || ||| | ||| || | | | Sbjct 92522 ACACGAACTCCCTCTCGATCTCCACCGCGTCGCGGACGATCCCCTTGACGCGCTGCTCAC 92463 Query 159888 CCGGCTTGCCCAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGCAGTCCCT 159947 | |||| | | | || | | || |||||||| |||||||| ||||| |||| Sbjct 92462 TCAGCTTCTTCCTTAGGAGGGTGT---ATAGCAGGCACGCGAAGTCGCAATGCAGCCCCT 92406 Query 159948 CGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACGCGGTTTGA 160007 |||| || ||||| | ||||||||| | | |||| || ||||| | ||| ||| ||| | Sbjct 92405 CGTCACGGGAGATCAGCTCGTTGGAGAAGGTGAGACCAGGCATCAACCCGCGCTTTTTCA 92346 Query 160008 GCCAAAAAATGGCCGCAAAAGCA-CCGCTAAAAAAGATCCCCTCCACGGCCGCAAACGCC 160066 ||| || ||||| ||| |||| ||| || |||||||| || ||| ||| || || Sbjct 92345 ACCAGAATATGGC-GCAGAAGCTTCCGGAGAAGAAGATCCCTTCGACGCACGCGAAGGCG 92287 Query 160067 ACGAGCCTCTCACCAAAAGAGGCGTTGGTGTCATGGGTCCACCTTTTGGCCCATTCAGCC 160126 | ||| | ||| |||| || | | ||| | |||| | |||||| | ||| Sbjct 92286 ATGAGACGCTCCGCAAAGGACTCCGAGCCGTC---GATCCAGCGCAGGGCCCACTGGGCC 92230 Query 160127 TTCTTTGCGATGCACGGCATGCGCTCGACGGCGTTAAACAATCTGTCCTGCTCCTTCACA 160186 ||||| || | || || | | ||||| ||| | || | | || || ||| | | Sbjct 92229 TTCTTAGCCACACAGGGGACGGTCTCGATGGCATGGAAGAGGCGGTGCTTCTCATCTGAA 92170 Query 160187 TCCTTGATCAGAGT----AGCAATCAGCTTCGAGTACATTTCTGCGTGCACATTTTCGAT 160242 |||||||| || ||||| ||| | ||||| || | ||| | ||||||||| Sbjct 92169 TCCTTGATGTAGGTCTCCAGCAA-CAGACTA---TACATCTCGGAGTGAATATTTTCGAT 92114 Query 160243 GGCCATCTGAAAGTTGTAGAAATATGTCGCCTCCAGATACTGCACCTCCTGTGTGAACCT 160302 ||| ||||| ||| |||||| ||||| | ||| ||||||| ||||||| Sbjct 92113 GGCAATCTGGAAGCCGTAGAAGGCGCGGGCCTCGGCAACCTGGACCTCCTTCATGAACCT 92054 Query 160303 TTGACCCAGATTGGCATTAACCAACCCGTCGGCGGCCGCAAAGAAAGCCAACACGTGAGA 160362 | | || || | ||| | || || | || ||||||||||| | ||||| || Sbjct 92053 CCCAGCGAGGTTCTCCAAAACGATGCCATCTGAAGCTGCAAAGAAAGCTAGGACGTGGGA 91994 Query 160363 GATGAAATGTCTCTCGTC 160380 || || ||| ||||||| Sbjct 91993 AATAAAGTGTTTCTCGTC 91976 >seq54992 Length=480207 Score = 140 bits (154), Expect = 5e-28 Identities = 478/741 (65%), Gaps = 22/741 (3%) Strand=Plus/Plus Query 159648 TCTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAATGGGT 159707 ||||||| || || |||||||| || | || || || ||||| | |||| |||| Sbjct 459813 TCTTCTCAAAGAAATTGGTCTTCCCTTGCAACGAGATGAGCTCCATCCAATCGAAGGGGT 459872 Query 159708 TCTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACAAATT 159767 ||| |||| ||| |||| | || || || ||| | |||||| ||||| |||| Sbjct 459873 TCTGGACGTTGTAGATCTTCCCGTACCCTAGCGCACCCAATAGCCTGTCGGCCACGAATT 459932 Query 159768 CGATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCGCTTCCG 159827 ||||||| | |||| |||| | ||| || |||| || | | || ||||| || Sbjct 459933 CGATGTACTGGCTCATCAGCTCGCCGTTCATTCCCACCAACGCACATGGCAGCGCGTCGC 459992 Query 159828 ACAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTGCGAGACACGTTCGTACC 159887 ||| ||||| |||| || || ||||| ||| | || | || || | | | Sbjct 459993 ACACGAACTCTCTCTCGATGTCCACCGCGTCGCGGATGATTCCCTTGATGCGCTGTTCAC 460052 Query 159888 CCGGCTTGCC---CAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGCAGTC 159944 | |||| ||| | || | || |||||||| ||||||||||| || | Sbjct 460053 TCAGCTTTTTTTTCAAGAGAGAGT------AAAGCAGGCACGCGAAGTCGCAGTGGAGCC 460106 Query 159945 CCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACGCGGTT 160004 ||||||| || ||||| | ||||||||| | | | || || ||||| | || ||| | Sbjct 460107 CCTCGTCTCGCGAGATCAGCTCGTTGGAGAAGGTCAGACCGGGCATCAAGCCGCGCTTCT 460166 Query 160005 TGAGCCAAAAAATGGCCGCAAAAGC-ACCGCTAAAAAAGATCCCCTCCACGGCCGCAAAC 160063 | | ||| || |||| |||| |||| ||| || ||||| || || || ||| || Sbjct 460167 TCAACCAGAAGATGG-CGCAGAAGCTTCCGGAGAAGAAGATACCTTCTACACACGCGAAA 460225 Query 160064 GCCACGAGCCTCTCACCAAAAGAGGCGTTGGTGTCATGGGTCCACCTTTTGGCCCATTCA 160123 || |||| | |||| | | ||| | || | | | |||| | |||||| | Sbjct 460226 GCGACGATGCGCTCAGCGA---AGGACTCGGCCCCGTCGATCCAGCGCAGGGCCCACTGT 460282 Query 160124 GCCTTCTTTGCGATGCACGGCATGCGCTCGACGGCGTTAAACAATCTGTCCTGCTCCTTC 160183 |||||||| |||| ||| || | | ||||| ||||| || | | || || || Sbjct 460283 GCCTTCTTAGCGACGCAAGGGACGGTCTCGATGGCGTGGAAGAGGCGGTGCTTCTGGGCG 460342 Query 160184 ACATCCTTGATCAGAGT----AGCAATCAGCTTCGAGTACATTTCTGCGTGCACATTTTC 160239 |||||||| || ||||| || |||||| || | ||| | ||| || Sbjct 460343 GAGTCCTTGATGTAGGTCTCGAGCAAAAGACT----GTACATCTCGGAGTGAATATTCTC 460398 Query 160240 GATGGCCATCTGAAAGTTGTAGAAATATGTCGCCTCCAGATACTGCACCTCCTGTGTGAA 160299 |||||| ||||| ||| |||||| ||||| ||| ||||||| |||| Sbjct 460399 GATGGCGATCTGGAAGCCGTAGAAGGCGCGGGCCTCGGCGACCTGGACCTCCTTCATGAA 460458 Query 160300 CCTTTGACCCAGATTGGCATTAACCAACCCGTCGGCGGCCGCAAAGAAAGCCAACACGTG 160359 ||| | | ||||| | ||| | ||||| | ||| |||||||| || | | ||| Sbjct 460459 CCTGCCAGCGAGATTCTCCAAAACGATGCCGTCAGAGGCGGCAAAGAAGGCAAGGATGTG 460518 Query 160360 AGAGATGAAATGTCTCTCGTC 160380 || ||||| ||| ||||||| Sbjct 460519 GGAAATGAAGTGTTTCTCGTC 460539 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 794103577429680