Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Juglans_20regia_20[refseq_20GCF_5F001411555.1_202015-10-22] 105,803 sequences; 699,672,627 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq1025 118 7e-22 seq1014 104 2e-17 seq45900 89.7 4e-13 seq55116 86.0 4e-12 >seq1025 Length=2429094 Score = 118 bits (130), Expect = 7e-22 Identities = 166/232 (72%), Gaps = 1/232 (0%) Strand=Plus/Minus Query 39488 CATCGCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAAT 39547 |||| || |||||||||||||| ||||| |||||||| ||| ||||| ||||| |||| Sbjct 1182375 CATC-CCTCCTCGCAAACGCAGCACCAAGTGCAAAGTCGATTCCTTTTGAATATTGTAAT 1182317 Query 39548 CGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCG 39607 |||| || ||| |||| || || || || || ||||||| || | |||||| || | Sbjct 1182316 CGGCTAAGGTCCGTCCATCCTCTAACTGCTTGCCAGCAAAAATCAACCTCTGCTGGTCTG 1182257 Query 39608 AGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTT 39667 || | ||||||||||| || || || | | | | || || | ||| | Sbjct 1182256 GTGGGATACCTTCTTTGTCTTGAATCTTAGCCTTCACATTATCAATGGTATCGGAGCTCT 1182197 Query 39668 CCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 | || ||||||||||| ||||| || || || || || || || |||||||| Sbjct 1182196 CAACCTCCAAAGTAATGGTTTTTCCAGTCAAGGTCTTGACAAAAATCTGCAT 1182145 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || |||| ||| || ||||||||||| ||| || || || || || |||||||| Sbjct 1182143 CCTCCACGCAGACGAAGCACCAAATGCAAGGTGGACTCCTTCTGAATGTTGTAATCGGCT 1182084 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 || | | |||| || ||||| ||||| |||| || || | ||||||||||| || Sbjct 1182083 AATGTCCTTCCATCTTCTAATTGCTTCCCAGCAAAGATCAACCTCTGCTGATCCGGTGGG 1182024 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672 | || || ||||| || ||| || | | ||| || || | |||||| || Sbjct 1182023 ATACCCTCCTTGTCTTGGATCTTTGCCTTGACATTATCTATGGTATCCGAGCTTTCAACT 1181964 Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 ||||| || || ||||| ||||| || || || || ||||| ||||| Sbjct 1181963 TCCAAGGTTATAGTTTTTCCCGTCAAGGTCTTCACAAAGATTTGCAT 1181917 Score = 87.8 bits (96), Expect = 1e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 39517 TGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCCAATTGT 39576 |||| |||| || || |||||||| ||||| |||| | | | |||| || | ||| Sbjct 1182803 TGCAGAGTGGACTCCTTCTGTATATTGTAATCCGCCAGAGTCCTTCCATCTTCAAGCTGT 1182744 Query 39577 TTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTT 39636 || || |||| || | | ||||||||| | |||| ||||||||||| || ||| Sbjct 1182743 TTACCCGCAAAGATAAGCCTCTGCTGATCTGGAGGTATTCCTTCTTTGTCCTGAATCTTT 1182684 Query 39637 TGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTT 39696 ||| | | | | ||| || | || || || ||||| ||||| || || || || Sbjct 1182683 GCTTTCACATTATCAATTGTATCAGAACTCTCGACCTCCAAGGTAATGGTCTTCCCAGTC 1182624 Query 39697 AAAGTTTTTACGAAGATCTGCAT 39719 || ||||| || ||||||||||| Sbjct 1182623 AATGTTTTCACAAAGATCTGCAT 1182601 >seq1014 Length=2264649 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 ||||| ||||||||||| ||||| |||| || ||| ||||| ||||| ||||| || Sbjct 109505 CCGCCACGCAAACGCAGCACCAAGTGCAGTGTCGATTCCTTTTGGATATTGTAATCTGCT 109446 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 || | | |||| || || || || || ||||||| || | |||||| || | || Sbjct 109445 AAGGTCCTTCCATCTTCTAACTGCTTGCCAGCAAAAATCAACCTCTGCTGGTCAGGTGGG 109386 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672 | ||||||||||| ||||| || | | | | || || | || || || Sbjct 109385 ATACCTTCTTTGTCTTGAATTTTAGCCTTCACATTATCAATAGTATCGGAACTCTCAACC 109326 Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 ||||||||||| ||||| || || || || || ||||| |||||||| Sbjct 109325 TCCAAAGTAATGGTTTTTCCAGTCAAGGTCTTAACGAAAATCTGCAT 109279 >seq45900 Length=1264 Score = 89.7 bits (98), Expect = 4e-13 Identities = 163/235 (69%), Gaps = 3/235 (1%) Strand=Plus/Minus Query 39488 CATCGCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAAT 39547 |||| || || || | ||| || || | ||| | ||| || || || ||||| || | Sbjct 527 CATC-CCACCACGGAGACGGAGGACGAGATGGAGCGTGGACTCCTTCTGAATATTGTAGT 469 Query 39548 CGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCG 39607 |||| | ||| | || ||||| || |||||| | || || |||||||||||||||| Sbjct 468 CGGCAAGGGTGCGACCGTCCTCCAACTGCTTCCCGGCGAAGATCAAACGCTGCTGATCCG 409 Query 39608 AGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCG-CTACTGTGTCTGCGCTT 39666 || | ||||| ||||| || || |||| ||| | | | ||||| | ||| Sbjct 408 GAGGAATACCTTCCTTGTCCTGGATCTTGGCCTTAA-CGTTGTCAATGGTGTCGGAGCTC 350 Query 39667 TCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATGT 39721 || || || | ||| || || || || || | ||||| |||||||||||||||| Sbjct 349 TCGACCTCGAGAGTGATGGTCTTGCCGGTGAGGGTTTTGACGAAGATCTGCATGT 295 >seq55116 Length=591887 Score = 86.0 bits (94), Expect = 4e-12 Identities = 159/232 (69%), Gaps = 1/232 (0%) Strand=Plus/Plus Query 39488 CATCGCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAAT 39547 |||| || |||| |||||| || ||||| || | ||| |||||| || || ||||||| Sbjct 230423 CATC-CCACCTCTCAAACGTAGAACCAAGTGGAGGGTGGATTCTTTCTGGATGTTATAAT 230481 Query 39548 CGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCG 39607 | || | | || |||| || | ||| || || |||| || | | |||||| || | Sbjct 230482 CAGCTAGAGTTCGGCCATCCTCGAGTTGCTTTCCAGCAAAGATAAGCCTCTGCTGGTCTG 230541 Query 39608 AGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTT 39667 ||| | || || ||||| ||||||| ||| | | | | || || | ||| | Sbjct 230542 GGGGAATTCCCTCCTTGTCCTGTATTTTTGCTTTGACGTTATCAATAGTATCAGAGCTCT 230601 Query 39668 CCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 |||| || | ||| || || || || || | ||| || || ||||||||||| Sbjct 230602 CCACCTCGAGAGTTATGGTCTTTCCAGTAAGAGTCTTGACAAAGATCTGCAT 230653 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346921675910699