Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Juglans_20regia_20[refseq_20GCF_5F001411555.1_202015-10-22] 105,803 sequences; 699,672,627 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq54992 136 5e-27 seq55722 129 7e-25 seq50617 129 7e-25 seq1321 105 8e-18 seq1182 89.7 6e-13 >seq54992 Length=480207 Score = 136 bits (150), Expect = 5e-27 Identities = 120/150 (80%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 102171 TCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCC 102230 ||||| |||||||| || |||| || |||||||| || |||||||||||||| || | Sbjct 460248 TCCTTCGCTGAGCGCATCGTCGCTTTCGCGTGTGTAGAAGGTATCTTCTTCTCCGGAAGC 460189 Query 102231 TTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAAC 102290 |||||||| || | ||| | |||||||| || | ||||| ||||| |||||||||| Sbjct 460188 TTCTGCGCCATCTTCTGGTTGAAGAAGCGCGGCTTGATGCCCGGTCTGACCTTCTCCAAC 460129 Query 102291 GAGCTTATCTCTCGTGACGAGGGACTCCAC 102320 ||||| ||||| || |||||||| |||||| Sbjct 460128 GAGCTGATCTCGCGAGACGAGGGGCTCCAC 460099 >seq55722 Length=703388 Score = 129 bits (142), Expect = 7e-25 Identities = 297/443 (67%), Gaps = 6/443 (1%) Strand=Plus/Minus Query 15888 TCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTTGCGGCG 15947 ||||| || || || | ||| | ||| ||||| || || | | || ||||| || Sbjct 349607 TCAAACCGTCCAGGCCTAAGTAACGCAGAGTCAAGAATGTCTGCCCTGTTAGTTGCTGCA 349548 Query 15948 ATGACAACAATACCTGTTTCGTTATCAAAACCATCCATCTCTGTCAAAAGCTGGTTAATA 16007 | |||| ||||| || | || ||||||||||| || |||||||||||||||| | Sbjct 349547 ACCACAATGATACCAGTATTACCTTCGAAACCATCCATTTCCGTCAAAAGCTGGTTAAGA 349488 Query 16008 GTTTGTTCCCGTTCATCATTCGCTGGCATACCA--CCAGCACTGCGTTGCTTTCCCACGG 16065 |||||||| | |||||||||| || | | | |||| | | ||| ||| || | Sbjct 349487 GTTTGTTCTCTTTCATCATTCCCT--CCACCGATTCCAGTTCCTCTTTGTCGTCCAACAG 349430 Query 16066 CATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCAAAGAGAT 16125 ||||||| ||||||| || || ||||| || ||| || || || || |||| Sbjct 349429 CATCAATTTCATCAACAAATACAATGCAAGGAGCATTCTCCTTGGCCTTTTTGAAAAGAT 349370 Query 16126 CCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATT 16185 | || || || ||| || ||||||||||||||||| ||||| | || | | | || Sbjct 349369 CACGAACTCGGGAGGCACCAACACCAACAAACATCTCAACAAACTCTGAACCTG-AGATG 349311 Query 16186 G-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTA 16244 | || || || ||| || |||||| ||||| || ||| || | |||||| || || Sbjct 349310 GAGAAAAATGGAACACCAGCTTCACCAGCAATCGCCTTGGCTAGCAAAGTCTTCCCAGTT 349251 Query 16245 CCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCCACTTCCAAAGTATCTC 16304 || || ||| || || | ||| |||||| || ||| || || | || Sbjct 349250 CCAGGAGGACCAATAAGAAGAACCCCTTTTGGAATGCGAGCCCCAATTGCAGTAAACCTT 349191 Query 16305 TCAGGTTGCTTAAGAAAATCCAC 16327 ||||| | || ||||| ||||| Sbjct 349190 TCAGGCTTTTTCAGAAACTCCAC 349168 >seq50617 Length=115889 Score = 129 bits (142), Expect = 7e-25 Identities = 118/149 (79%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 102171 TCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCC 102230 |||||||| ||||| ||| |||| || ||||| || || || ||||||||||| || | Sbjct 92267 TCCTTTGCGGAGCGTCTCATCGCCTTCGCGTGCGTCGAAGGGATCTTCTTCTCCGGAAGC 92326 Query 102231 TTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAAC 102290 |||||||| || | ||| | || ||||| || | ||||| |||||| |||||||||| Sbjct 92327 TTCTGCGCCATATTCTGGTTGAAAAAGCGCGGGTTGATGCCTGGTCTCACCTTCTCCAAC 92386 Query 102291 GAGCTTATCTCTCGTGACGAGGGACTCCA 102319 ||||| ||||| ||||||||||| || || Sbjct 92387 GAGCTGATCTCCCGTGACGAGGGGCTGCA 92415 >seq1321 Length=289959 Score = 105 bits (116), Expect = 8e-18 Identities = 195/284 (69%), Gaps = 14/284 (5%) Strand=Plus/Minus Query 15974 AAAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 16033 ||| ||||||||||| ||||| |||||||| |||||||| |||| ||||||||| | Sbjct 178808 AAACCCATCCATCTCCGTCAACAGCTGGTTGATAGTTTGCTCCCTCTCATCATTCCC--A 178751 Query 16034 CATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATG 16091 | | | | || || | | ||| | || |||||||||||||| || ||||| || ||| Sbjct 178750 CCTCCAAGTCCCGCCCCTCTCTGCCTCCCTACGGCATCAATCTCGTCTATGAACACAATG 178691 Query 16092 CATGG-----TTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCA 16146 || || | || ||| || ||| || | |||| || | | || || | Sbjct 178690 CACGGCGCTTTAGACTTT-----GCCTTTTCGAACAAGTCCCTCACTCTCGAAGCCCCAA 178636 Query 16147 CACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATT 16206 | |||||||||| |||||||| | | || | ||| || ||| || || || || Sbjct 178635 CTCCAACAAACAATTCCACAAACTCCGAAGCCGCACACGAGAAGAATGGCACGCCAGCTT 178576 Query 16207 CACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGC 16250 | || || | |||| ||| | ||||||||||| ||||| ||| Sbjct 178575 CCCCTGCTACCGCTCTGGCCAATAGAGTCTTACCGGTACCGGGC 178532 >seq1182 Length=383271 Score = 89.7 bits (98), Expect = 6e-13 Identities = 96/125 (77%), Gaps = 4/125 (3%) Strand=Plus/Minus Query 15974 AAAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 16033 ||| ||||||||||| ||||| |||||||| |||||||| |||| ||||||||| | Sbjct 49771 AAACCCATCCATCTCCGTCAAGAGCTGGTTGATAGTTTGCTCCCTCTCATCATTCCC--A 49714 Query 16034 CATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATG 16091 | | | | || || | | ||| | ||||| |||||||||||||| ||||| || ||| Sbjct 49713 CCTCCAAGCCCCGCCCCTCTCTGCCTCCCCACCGCATCAATCTCATCGATGAACACAATG 49654 Query 16092 CATGG 16096 || || Sbjct 49653 CACGG 49649 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 619921444898160