Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Juglans_20regia_20[refseq_20GCF_5F001411555.1_202015-10-22] 105,803 sequences; 699,672,627 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq55722 132 6e-26 seq54992 118 1e-21 seq50617 100 3e-16 seq1761 93.3 5e-14 seq51957 86.0 7e-12 seq1182 86.0 7e-12 >seq55722 Length=703388 Score = 132 bits (146), Expect = 6e-26 Identities = 251/365 (69%), Gaps = 6/365 (2%) Strand=Plus/Minus Query 9195 TCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGCG 9254 ||||| || || || | ||| | ||| ||||| || || | | || || || || Sbjct 349607 TCAAACCGTCCAGGCCTAAGTAACGCAGAGTCAAGAATGTCTGCCCTGTTAGTTGCTGCA 349548 Query 9255 ATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTAATA 9314 | |||| ||||| || | | || ||||||||||| || |||||||| ||||||| | Sbjct 349547 ACCACAATGATACCAGTATTACCTTCGAAACCATCCATTTCCGTCAAAAGCTGGTTAAGA 349488 Query 9315 GTTTGTTCCCGTTCATCATTCGCTGGCATACCA--CCAGCACTGCGTTGCTTTCCCACGG 9372 |||||||| | |||||||||| || | | | |||| | | ||| ||| || | Sbjct 349487 GTTTGTTCTCTTTCATCATTCCCT--CCACCGATTCCAGTTCCTCTTTGTCGTCCAACAG 349430 Query 9373 CATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGAGAT 9432 ||||||| ||||||| || ||||| || || ||| || ||| ||| || |||| Sbjct 349429 CATCAATTTCATCAACAAATACAATGCAAGGAGCATTCTCCTTGGCCTTTTTGAAAAGAT 349370 Query 9433 CGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATT 9492 | ||||| | ||| || ||||||||||||||||| ||||| | || | | | || Sbjct 349369 CACGAACTCGGGAGGCACCAACACCAACAAACATCTCAACAAACTCTGAACCTG-AGATG 349311 Query 9493 G-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTA 9551 | || || || ||| || |||||| ||||| || ||| || | |||||| || || Sbjct 349310 GAGAAAAATGGAACACCAGCTTCACCAGCAATCGCCTTGGCTAGCAAAGTCTTCCCAGTT 349251 Query 9552 CCTGG 9556 || || Sbjct 349250 CCAGG 349246 >seq54992 Length=480207 Score = 118 bits (130), Expect = 1e-21 Identities = 116/150 (77%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 117285 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACC 117344 |||||| ||||| ||||| || || || || || |||||| || || ||||| | || Sbjct 460099 GTGGAGCCCCTCGTCTCGCGAGATCAGCTCGTTGGAGAAGGTCAGACCGGGCATCAAGCC 460158 Query 117345 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 117404 |||||||||||||| | || |||||||| ||||||||||||||||| || ||||| Sbjct 460159 GCGCTTCTTCAACCAGAAGATGGCGCAGAAGCTTCCGGAGAAGAAGATACCTTCTACACA 460218 Query 117405 CGCAAACGCAAAAAGGCGCTCGGCGAAGGA 117434 ||| || || | | |||||| |||||||| Sbjct 460219 CGCGAAAGCGACGATGCGCTCAGCGAAGGA 460248 >seq50617 Length=115889 Score = 100 bits (110), Expect = 3e-16 Identities = 180/262 (69%), Gaps = 7/262 (3%) Strand=Plus/Minus Query 117286 TGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACCC 117345 || || ||||| || ||||| || || || || |||||| || || ||||| | || Sbjct 92415 TGCAGCCCCTCGTCACGGGAGATCAGCTCGTTGGAGAAGGTGAGACCAGGCATCAACCCG 92356 Query 117346 CGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACAC 117405 ||||| |||||||| | || |||||||| |||||||||||||| || || || ||| Sbjct 92355 CGCTTTTTCAACCAGAATATGGCGCAGAAGCTTCCGGAGAAGAAGATCCCTTCGACGCAC 92296 Query 117406 GCAAACGCAAAAAGGCGCTCGGCGAAGGA--GCGAGACTTTGTGTCAAACCATTTCATTG 117463 || || || | || ||||| || ||||| |||| | ||| | ||| || | Sbjct 92295 GCGAAGGCGATGAGACGCTCCGCAAAGGACTCCGAGCC-----GTCGATCCAGCGCAGGG 92241 Query 117464 CCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGCTTCAAATAACTGCTTCT 117523 |||| | |||||||| | | ||| || || || | |||||| | || | | | || Sbjct 92240 CCCACTGGGCCTTCTTAGCCACACAGGGGACGGTCTCGATGGCATGGAAGAGGCGGTGCT 92181 Query 117524 TTTCAGATCCATCCTTAATGTA 117545 | ||| | |||||| ||||| Sbjct 92180 TCTCATCTGAATCCTTGATGTA 92159 >seq1761 Length=289715 Score = 93.3 bits (102), Expect = 5e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 107168 TGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGG 107227 || || ||||| || || ||||| || ||||| || | || ||| ||||| | || Sbjct 164699 TGAGGCCTTGGAGTCCCTGCATTAAAAAGGGTGGGAGACGCATGAGTGAACCACCGCTGA 164758 Query 107228 GACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCC 107287 |||||| | | |||||| | | ||||||||||||| | | ||| || || | || Sbjct 164759 GACATCATATGGTATGTTTTGATAGCAGAATCAATGTCATTCTTGTGAATTCCAACAGCA 164818 Query 107288 ACACGCATAAACATGTATTGGGGTGTTTCCATGAGGATGCCATCGAGCCGTTGA-AGATA 107346 || | ||| ||||||| ||| ||| |||| | | | || | || || | | || || Sbjct 164819 ACCCTCATCAACATGTGTTGAGGTCTTTCTACAACCTTTCCTTGGA-CCTTCAATAGGTA 164877 Query 107347 GCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTCCCG 107394 | ||||||||||||||| |||||||||| || | ||| |||| || Sbjct 164878 GGATCTCTCAAGGGTTTTGAAACCAAAGTAATCATAGTCAAAGTCTCG 164925 Score = 82.4 bits (90), Expect = 9e-11 Identities = 108/150 (72%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 106246 TGAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAGACCTTGAACACCCAAACC 106305 ||||||||||| || |||||| ||| ||| |||||||| || || || | ||| Sbjct 162944 TGAATCAAATGGCATGCCAAGCAAAATGAATGTATCAGCGAGACCCTGGACTCCAATACC 163003 Query 106306 AATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCAACGGGATAAAAATTTCTGTC 106365 ||||||||| ||||| | ||| ||| ||| ||||| ||||| || || |||| || Sbjct 163004 AATAGGTCTATGTCGAAAATTTGACCTTCTTGCAGTTTCAACAGGGTAGTAATTAACATC 163063 Query 106366 AATGACTCGGTTTAGATTTTTGGTAACAAT 106395 ||| | | ||| || || || || ||||| Sbjct 163064 AATTATTTTGTTGAGGTTCTTAGTTACAAT 163093 >seq51957 Length=105213 Score = 86.0 bits (94), Expect = 7e-12 Identities = 163/236 (69%), Gaps = 3/236 (1%) Strand=Plus/Minus Query 107168 TGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGG 107227 || || ||||| || || ||||| || ||||| || | || ||| ||||| | || Sbjct 19671 TGAGGCCTTGGGGTCCCTGCATTAAAAAGGGTGGGAGAAGCATGAGTGAACCATCGCTGA 19612 Query 107228 GACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCC 107287 |||||| | | ||||| | | | |||| ||||| || ||| ||| || || | || Sbjct 19611 GACATCATATGATATGTTTTGATGGCAGACTCAATATCATCCTTGTGAATTCCAACCGCG 19552 Query 107288 ACACGCATAAACATGTATTGGGGTGTTTCCATGAGGATGCCATCGAGCCGTTGA-AGATA 107346 || | ||| ||||||| ||| || |||| | | | || | || || | | || || Sbjct 19551 ACCCTCATCAACATGTGTTGAGGCCTTTCTACAACCTTTCCTTGGA-CCTTCAATAGGTA 19493 Query 107347 GCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTCCCGCTTCGTAT 107402 | | ||||||||||||||| |||||||||| || | ||| | || || |||||| Sbjct 19492 GGACCTCTCAAGGGTTTTGAAACCAAAGTAATCATAGTCAAAATCTCG-ATCGTAT 19438 >seq1182 Length=383271 Score = 86.0 bits (94), Expect = 7e-12 Identities = 95/125 (76%), Gaps = 4/125 (3%) Strand=Plus/Minus Query 9281 AAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 9340 ||| ||||||||||| ||||| || ||||| |||||||| |||| ||||||||| | Sbjct 49771 AAACCCATCCATCTCCGTCAAGAGCTGGTTGATAGTTTGCTCCCTCTCATCATTCCC--A 49714 Query 9341 CATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATA 9398 | | | | || || | | ||| | ||||| |||||||||||||| ||||| ||||| Sbjct 49713 CCTCCAAGCCCCGCCCCTCTCTGCCTCCCCACCGCATCAATCTCATCGATGAACACAATG 49654 Query 9399 CATGG 9403 || || Sbjct 49653 CACGG 49649 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589200528267720