Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Juglans_20regia_20[refseq_20GCF_5F001411555.1_202015-10-22] 105,803 sequences; 699,672,627 total letters Query= NC_015280.1 Length=181044 Score E Sequences producing significant alignments: (Bits) Value seq1861 262 5e-65 seq47040 118 1e-21 seq54963 114 1e-20 >seq1861 Length=68153 Score = 262 bits (290), Expect = 5e-65 Identities = 641/971 (66%), Gaps = 43/971 (4%) Strand=Plus/Plus Query 170529 TTTGATGTTCTTGACGACTGGTTAAAGAGAGATCGTTTTGTATTCATAGGATGGTCTGGT 170588 |||||| || | || ||||||||| ||| || | ||| || || |||| ||||| ||| Sbjct 26949 TTTGATATTATGGATGACTGGTTACGGAGGGACCATTTCGTTTTTGTAGGTTGGTCCGGT 27008 Query 170589 CTTTTACTTCTGCCTTGTGCATACCTATCAATCGGTGGTTGGTTCTTAGGGACTACCTTC 170648 || ||||| | |||||||| || | | | || |||||||| ||| || ||||| Sbjct 27009 CTATTACTCTTTCCTTGTGCCTATTTTGCCTTAGGGGGTTGGTTTACAGGTACAACCTTT 27068 Query 170649 GTTACATCATGGTATACACATGGTGTTGCTTCCTCATATCTTGAGGGATGTAACTTCCTA 170708 || || |||| ||||||||| || | || || ||| | || || || |||||| || Sbjct 27069 GTAACTTCATAGTATACACACGGATTGGCGAGTTCCTATTTGGAAGGCTGCAACTTCTTA 27128 Query 170709 ACAGCAGCAGTTTCCACACCTGGCGACGCAATGGGT---CATAGTCTTC--TGTTCCTTT 170763 || || |||||||| || | | || | || | | || | |||| |||| || | Sbjct 27129 ACCGCTGCAGTTTCTACTC-TCGCTA----ATAGTTTAGCACACTCTTTGTTGTTACTAT 27183 Query 170764 GGGGACCTGAAGCACAAGGTTCATTTGTTCGTTGGTTACAACTCGGAGGTTTATGGAACT 170823 |||| || ||| ||||||| ||| | |||||| ||| | || || | |||| | Sbjct 27184 GGGGTCCAGAAACACAAGGAGATTTTACTTGTTGGTGTCAATTAGGTAGTCTGTGGACTT 27243 Query 170824 TTGTAGCATTACATGGAGTCTTTGGACTCATAGGTTTCATGCTCAGACAATTTGAGATCG 170883 |||| || ||| |||||| |||||| ||| | | | | ||||| | | Sbjct 27244 TTGTTGC-----------TCTCTGGACTAATAGGTCTCACGTTACGTTAGTTTGAACTTG 27292 Query 170884 CAGGACTTGTAGGCATCAGACCTTACAACGCACTCGCATTCTCTGCTGTTATCGCAGTCT 170943 | || ||| | ||||||| || ||| |||||||||||||| || || | | Sbjct 27293 CTCGATCTGTTCAATTGCGACCTTATAATGCAATCGCATTCTCTGCTCCAATTGCTTTTT 27352 Query 170944 TCACTAGCATCTTTCTGATCTATCCACTAGGTCAGCACAGTTGGTTCTTCGCACCATCAT 171003 | | | || ||||| |||| ||||||||| |||||||||| | || | Sbjct 27353 TTTTTTTGGTATTGCTGATTTATCTACTAGGTCAATCGGGTTGGTTCTTTGTGCCTAGCT 27412 Query 171004 TCGGTGTCGCAGCAATTTTTCGTTATATCTTATTCATACAAGGTTTCCACAACATTACAT 171063 | ||||| ||||| || |||| || | ||| || | |||| || || || |||| Sbjct 27413 TTGGTGTAGCAGCTATATTTCATTCTTTCTCTTTT-TCTAAGGGTTTCATAATTGGACAT 27471 Query 171064 TGAATCCATTTCACATGATGGGTGTTGCAGGAATACTAGGTGGAGCATTATTATGTGCCA 171123 |||| |||||||| |||||||| ||||| || || | || | || | |||| | | Sbjct 27472 TGAACCCATTTCATATGATGGGGGTTGCTGGTGTAATTGGCGCTGCTCTGCTATGCGTTA 27531 Query 171124 TTCATGGTGCAACAGTGCAGAACACATTGTATGAAGACACATCAGTTTATACTGATAATA 171183 |||||||||| || | | | || || | ||||| || |||| Sbjct 27532 TTCATGGTGCTACCTTAGAAAGTACTTTATTTGAAG------------ATGGTGAT---- 27575 Query 171184 AAATTCAAAGCACAACATTCCGTGCCTTTGATCCTACACAGGAAGAAGAAACTTACAGTA 171243 | |||| ||||| |||| ||| | || || || | ||||||||||| | Sbjct 27576 -GGTGCAAA----TACATTTTGTGCTTTTAACCCAACTCAAGCTGAAGAAACTTATTCAA 27630 Query 171244 TGATTACAGCAAACAGATTCTGGTCACAGATATTTGGTATTGCTTTCTCTAACAAAAGAT 171303 || | || || ||| || ||||| || || ||||| || |||| || || ||| | | Sbjct 27631 TGGTCACCGCTAACCACTTTTGGTCCCAAATCTTTGGGGTTACTTTTTCCAATAAACGTT 27690 Query 171304 TTTTACACTTCCTTATGTTGTTCGTTCCTGTCATGGGTATGTGGACATCATCTATAGGTA 171363 ||||| ||||||||| | || || | || | || | |||| || | || Sbjct 27691 GGTTACATTTCCTTATGCTATTTGTACTAGTAACCAGTTTATGGATGAGTGCTCTTGGAG 27750 Query 171364 TCGTAGGTCTAGCACTTAACCTCAGAGCATACGATTTTGTATCTCAAGAGATAAGAGCAG 171423 | || ||||| || || ||||| | || || || ||||| ||||| || || | |||| Sbjct 27751 TAGTCGGTCTGGCTCTGAACCTACGTGCCTATGACTTTGTTTCTCAGGAAATCCGTGCAG 27810 Query 171424 CAGAAGACCCAGAGTTCGAGACTTTCTACACTAAGAATATACTTCTTAATGAAGGTATGA 171483 |||||| || || || |||||||||||||| || ||||| ||| | ||||||||||| Sbjct 27811 TAGAAGATCCTGAATTTGAGACTTTCTACACAAAAAATATTCTTTTAAATGAAGGTATTC 27870 Query 171484 GAGCATGGATG 171494 || |||||| Sbjct 27871 ATGCTTGGATG 27881 >seq47040 Length=8764 Score = 118 bits (130), Expect = 1e-21 Identities = 157/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 169786 GTTGCATACTCTGCACCAGTATCTGCTGCATTCGCTGTATTCTTAGTATACCCATTTGGT 169845 |||||||| || || || || | ||||| |||| ||||| | || ||| ||||| Sbjct 5687 GTTGCATATTCAGCTCCTGTTGCAGCTGCTACTACTGTTTTCTTGATCTATCCAATTGGT 5628 Query 169846 CAGGGTTCATTCTCTGATGGTATGCCACTAGGTATCTCAGGTACTTTCAACTTTATGTTC 169905 || || || ||| | |||| ||| ||||| || || |||||||||||||| ||| | Sbjct 5627 CAAGGAAGCTTTTCTCACGGTAAGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATT 5568 Query 169906 GTTTTCCAAGCAGAGCATAACATTCTAATGCATCCTTTCCACATGGCAGGAGTAGCAGGA 169965 || ||||| || ||||| ||||| || ||||| || || || ||| ||| ||||| || Sbjct 5567 GTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCATATGTTAGGTGTAGCTGGT 5508 Query 169966 ATGTTCGGAGGATCTTTATTCTCAGCAATGCATGGTTC 170003 | ||||| || | |||| || ||||||||||| Sbjct 5507 GTATTCGGCGGCTTCCTATTTAGTGCTATGCATGGTTC 5470 >seq54963 Length=251348 Score = 114 bits (126), Expect = 1e-20 Identities = 156/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 169786 GTTGCATACTCTGCACCAGTATCTGCTGCATTCGCTGTATTCTTAGTATACCCATTTGGT 169845 |||||||| || || || || ||||| ||||| || || | || ||| ||||| Sbjct 117193 GTTGCATATTCAGCTCCTGTTGTAGCTGCTACTGCTGTTTTATTGATCTATCCAATTGGT 117252 Query 169846 CAGGGTTCATTCTCTGATGGTATGCCACTAGGTATCTCAGGTACTTTCAACTTTATGTTC 169905 || || || ||||| |||||||| ||||| || || |||||||||||||| ||| | Sbjct 117253 CAAGGAAGCTTTTCTGACGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATT 117312 Query 169906 GTTTTCCAAGCAGAGCATAACATTCTAATGCATCCTTTCCACATGGCAGGAGTAGCAGGA 169965 || ||||| || ||||| ||||| || ||||| || || |||||| | | ||| || Sbjct 117313 GTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTACGTGTAATTGGT 117372 Query 169966 ATGTTCGGAGGATCTTTATTCTCAGCAATGCATGGTTC 170003 | ||||| || || |||| | ||||||||||| Sbjct 117373 GTATTCGGCGGCTCCCTATTTAGTGTTATGCATGGTTC 117410 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578446769351520