Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Juglans_20regia_20[refseq_20GCF_5F001411555.1_202015-10-22] 105,803 sequences; 699,672,627 total letters Query= NC_015282.1 Length=174079 Score E Sequences producing significant alignments: (Bits) Value seq1861 441 8e-119 seq47040 154 2e-32 seq54963 141 1e-28 >seq1861 Length=68153 Score = 441 bits (488), Expect = 8e-119 Identities = 683/967 (71%), Gaps = 20/967 (2%) Strand=Plus/Plus Query 165206 GATGACTGGCTTAAACGAGATCGTTTCGTTTTTGTTGGTTGGTCTGGACTTCTTCTTTTT 165265 ||||||||| | | || | |||||||||||| |||||||| || || | || ||| Sbjct 26961 GATGACTGGTTACGGAGGGACCATTTCGTTTTTGTAGGTTGGTCCGGTCTATTACTCTTT 27020 Query 165266 CCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGGACTACTTTCGCGACGAGTTGG 165325 || ||| ||| |||| | || |||||| |||| || || || || | || | | Sbjct 27021 CCTTGTGCCTATTTTGCCTTAGGGGGTTGGTTTACAGGTACAACCTTTGTAACTTCATAG 27080 Query 165326 TATACTCACGGGTTGGCAAGTTCCTATCTGGAGGG-TGCAAACTTTCTTACTGCGGCAGT 165384 ||||| ||||| ||||| ||||||||| |||| || ||||| ||| | || || ||||| Sbjct 27081 TATACACACGGATTGGCGAGTTCCTATTTGGAAGGCTGCAA-CTTCTTAACCGCTGCAGT 27139 Query 165385 TTCTACTCCAGCAGACGCTATGGGTCATTCTCTTCTGCTTCTCTGGGGTCCTGAGGCTCA 165444 |||||||| || | | | | || ||| | || | || |||||||| || | || Sbjct 27140 TTCTACTCTCGCTAATAGTTTAGCACACTCTTTGTTGTTACTATGGGGTCCAGAAACACA 27199 Query 165445 AGGGGATTTCGTCAGGTGGATCCAACTTGGGGGACTCTGGGCTTTTGTGGCGCTCCACGG 165504 ||| ||||| | ||| ||| | || | || ||| ||||||| || ||| Sbjct 27200 AGGAGATTTTACTTGTTGGTGTCAATTAGGTAGTCTGTGGACTTTTGTTGCTCTCT---- 27255 Query 165505 GGCTTTCGCTCTAATTGGTTTCATGCTTCGTCAGTTTGAATTAGCACG-TCTCATCGGTA 165563 | ||||| ||| ||| | | ||| |||||||| | || || ||| || | Sbjct 27256 -------GGACTAATAGGTCTCACGTTACGTTAGTTTGAACTTGCTCGATCTGTTCAAT- 27307 Query 165564 TCCGTCCCTACAATGCTATTGCGTTCTCTGGTCCTATCGCTGTTTTTGTTAGCGTCTTTC 165623 | || || || ||||| || || ||||||| ||| || ||| ||||| || || || | Sbjct 27308 TGCGACCTTATAATGCAATCGCATTCTCTGCTCCAATTGCTTTTTTTTTTTTGGTATTGC 27367 Query 165624 TCATCTACCCTCTGGGTCAATCGAGTTGGTTTTTCGCTCC-ATCTTTCGGGGTCGCAGCA 165682 | || || | || ||||||||| ||||||| || | || | |||| || || ||||| Sbjct 27368 TGATTTATCTACTAGGTCAATCGGGTTGGTTCTTTGTGCCTAGCTTT-GGTGTAGCAGCT 27426 Query 165683 ATCTT-CAGGTTCCTTCTCTTCCTACAAGGATTCCATAACTGGACCTTGAATCCCTTTCA 165741 || || || ||| ||||||| | |||| || ||||| ||||| ||||| || ||||| Sbjct 27427 ATATTTCA--TTCTTTCTCTTTTTCTAAGGGTTTCATAATTGGACATTGAACCCATTTCA 27484 Query 165742 TATGATGGGTGTTGCAGGTATCCTGGGTGGTGCATTGCTTTCTGCCATCCATGGTGTTAC 165801 ||||||||| ||||| ||| | | || | ||| |||| | | || ||||||| ||| Sbjct 27485 TATGATGGGGGTTGCTGGTGTAATTGGCGCTGCTCTGCTATGCGTTATTCATGGTGCTAC 27544 Query 165802 AGTAGAGAATACTCTGTATCAAGATGGTGACGATGCAAATACTTTCAAGGCATTTGACTC 165861 |||| | |||| | | | |||||||||| | ||||||||| || || ||| || | Sbjct 27545 CTTAGAAAGTACTTTATTTGAAGATGGTGATGGTGCAAATACATTTTGTGCTTTTAACCC 27604 Query 165862 TACTCAAGAGGAAGAAACCTACTCAATGGTTACTGCAAACCGTTTCTGGTCTCAGATCTT 165921 ||||||| |||||||| || |||||||| || || |||| || ||||| || ||||| Sbjct 27605 AACTCAAGCTGAAGAAACTTATTCAATGGTCACCGCTAACCACTTTTGGTCCCAAATCTT 27664 Query 165922 CGGTATTGCGTTTAGTAATAAGAGGTGGTTGCATTTCTTTATGCTGTTTGTTCCTGTTAT 165981 || || | ||| ||||| | ||||| |||||| ||||||| ||||| | || | Sbjct 27665 TGGGGTTACTTTTTCCAATAAACGTTGGTTACATTTCCTTATGCTATTTGTACTAGTAAC 27724 Query 165982 GGGTCTTTGGACAAGTTCCATCGGTATTATTGGTCTTGCTCTCAACCTTCGTGCTTATGA 166041 || | |||| ||| | | || | | ||||| ||||| ||||| ||||| ||||| Sbjct 27725 CAGTTTATGGATGAGTGCTCTTGGAGTAGTCGGTCTGGCTCTGAACCTACGTGCCTATGA 27784 Query 166042 CTTTGTATCCCAAGAGATCAGAGCAGCAGAAGACCCAGAGTTTGAAACCTTCTACACGAA 166101 |||||| || || || ||| | |||| |||||| || || ||||| || |||||||| || Sbjct 27785 CTTTGTTTCTCAGGAAATCCGTGCAGTAGAAGATCCTGAATTTGAGACTTTCTACACAAA 27844 Query 166102 AAACATTCTCTTGAATGAAGGTCTTCGTGCTTGGTTGGCACCAGTCGATCAACCGCATGA 166161 ||| ||||| || ||||||||| ||| ||||||| ||| | ||||| || ||||| Sbjct 27845 AAATATTCTTTTAAATGAAGGTATTCATGCTTGGATGGAGGCTCAAGATCAGCCTCATGA 27904 Query 166162 GAACTTT 166168 |||||| Sbjct 27905 AAACTTT 27911 >seq47040 Length=8764 Score = 154 bits (170), Expect = 2e-32 Identities = 168/223 (75%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 164169 GTTGCTTACTCTGCACCCGTTGCAGCAGCATCCGCAGTCTTCCTGGTCTATCCTTTCGGT 164228 ||||| || || || || |||||||| || | | || ||| || ||||||| | ||| Sbjct 5687 GTTGCATATTCAGCTCCTGTTGCAGCTGCTACTACTGTTTTCTTGATCTATCCAATTGGT 5628 Query 164229 CAAGGTTCGTTCTCTGACGCAATGCCCCTGGGCATCTCTGGCACCTTCAACTACATGTTG 164288 ||||| || ||| ||| | ||| || || || ||||| || ||||||| |||| | Sbjct 5627 CAAGGAAGCTTTTCTCACGGTAAGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATT 5568 Query 164289 GTGTTCCAAGCAGAGCACAACATCCTGATGCACCCCTTCCATATGCTCGGCGTTGCTGGC 164348 || ||||| || |||||||||||||| |||||||| || |||||| | || || ||||| Sbjct 5567 GTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCATATGTTAGGTGTAGCTGGT 5508 Query 164349 GTATTTGGCGGTTCTCTGTTCAGTGCAATGCACGGTTCTCTGG 164391 ||||| ||||| | || || ||||| ||||| |||||| ||| Sbjct 5507 GTATTCGGCGGCTTCCTATTTAGTGCTATGCATGGTTCTTTGG 5465 >seq54963 Length=251348 Score = 141 bits (156), Expect = 1e-28 Identities = 165/223 (74%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 164169 GTTGCTTACTCTGCACCCGTTGCAGCAGCATCCGCAGTCTTCCTGGTCTATCCTTTCGGT 164228 ||||| || || || || |||| ||| || | || || || || ||||||| | ||| Sbjct 117193 GTTGCATATTCAGCTCCTGTTGTAGCTGCTACTGCTGTTTTATTGATCTATCCAATTGGT 117252 Query 164229 CAAGGTTCGTTCTCTGACGCAATGCCCCTGGGCATCTCTGGCACCTTCAACTACATGTTG 164288 ||||| || ||||||| ||||| || || || ||||| || ||||||| |||| | Sbjct 117253 CAAGGAAGCTTTTCTGACGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATT 117312 Query 164289 GTGTTCCAAGCAGAGCACAACATCCTGATGCACCCCTTCCATATGCTCGGCGTTGCTGGC 164348 || ||||| || |||||||||||||| |||||||| || || ||| | | || ||| Sbjct 117313 GTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTACGTGTAATTGGT 117372 Query 164349 GTATTTGGCGGTTCTCTGTTCAGTGCAATGCACGGTTCTCTGG 164391 ||||| ||||| || || || |||| ||||| |||||| ||| Sbjct 117373 GTATTCGGCGGCTCCCTATTTAGTGTTATGCATGGTTCTTTGG 117415 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556188246067320