Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Juglans_20regia_20[refseq_20GCF_5F001411555.1_202015-10-22] 105,803 sequences; 699,672,627 total letters Query= NC_015283.1 Length=176428 Score E Sequences producing significant alignments: (Bits) Value seq47040 156 5e-33 seq54963 141 1e-28 seq2016 105 8e-18 >seq47040 Length=8764 Score = 156 bits (172), Expect = 5e-33 Identities = 172/228 (75%), Gaps = 1/228 (0%) Strand=Plus/Minus Query 168875 GTTGCTTATTCAGCACCAGTATCTGCAGCATTTGCAGTATTCCTTGTATACCCATTTGGT 168934 ||||| |||||||| || || | || || | | || ||| | | || ||| ||||| Sbjct 5687 GTTGCATATTCAGCTCCTGTTGCAGCTGCTACTACTGTTTTCTTGATCTATCCAATTGGT 5628 Query 168935 CAGGGTTCTTTCTCTGATGGTATGCCTCTAGGAATTTCTGGAACATTCAACTTCATGTTC 168994 || || || ||| | |||| |||||||||||||||||| || |||||||||||| | Sbjct 5627 CAAGGAAGCTTTTCTCACGGTAAGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATT 5568 Query 168995 GTATTCCAAGCAGAGCACAACATTCTTATGCATCCCTTCCATATGGCAGGAGTAGCAGGT 169054 |||||||| || ||||||||||| |||||||| || || |||||| ||| ||||| ||| Sbjct 5567 GTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCATATGTTAGGTGTAGCTGGT 5508 Query 169055 ATGTTCGGTGGATCTCTATTCTCCGCAATGCATGGTTCACTTGTAACA 169102 | ||||| || | ||||| || ||||||||||| ||| |||| Sbjct 5507 GTATTCGGCGGCTTCCTATTTAGTGCTATGCATGGTTC-TTTGGAACA 5461 >seq54963 Length=251348 Score = 141 bits (156), Expect = 1e-28 Identities = 169/228 (74%), Gaps = 1/228 (0%) Strand=Plus/Plus Query 168875 GTTGCTTATTCAGCACCAGTATCTGCAGCATTTGCAGTATTCCTTGTATACCCATTTGGT 168934 ||||| |||||||| || || || || ||| || || | | || ||| ||||| Sbjct 117193 GTTGCATATTCAGCTCCTGTTGTAGCTGCTACTGCTGTTTTATTGATCTATCCAATTGGT 117252 Query 168935 CAGGGTTCTTTCTCTGATGGTATGCCTCTAGGAATTTCTGGAACATTCAACTTCATGTTC 168994 || || || ||||| ||||||||||||||||||||||| || |||||||||||| | Sbjct 117253 CAAGGAAGCTTTTCTGACGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATT 117312 Query 168995 GTATTCCAAGCAGAGCACAACATTCTTATGCATCCCTTCCATATGGCAGGAGTAGCAGGT 169054 |||||||| || ||||||||||| |||||||| || || || ||| | | ||| ||| Sbjct 117313 GTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTACGTGTAATTGGT 117372 Query 169055 ATGTTCGGTGGATCTCTATTCTCCGCAATGCATGGTTCACTTGTAACA 169102 | ||||| || || ||||| | ||||||||||| ||| |||| Sbjct 117373 GTATTCGGCGGCTCCCTATTTAGTGTTATGCATGGTTC-TTTGGAACA 117419 >seq2016 Length=232386 Score = 105 bits (116), Expect = 8e-18 Identities = 111/145 (77%), Gaps = 1/145 (1%) Strand=Plus/Plus Query 168931 TGGTCAGGGTTCTTTCTCTGATGGTATGCCTCTAGGAATTTCTGGAACATTCAACTTCAT 168990 |||||| || || |||||||||||||||| ||||| ||| | || ||||| ||||| Sbjct 155472 TGGTCAAGGAAGCTTTTCTGATGGTATGCCTCCAGGAAGTTCGCGTACTTTCAAGTTCAT 155531 Query 168991 GTTCGTATTCCAAGCAGAGCACAACATTCTTATGCATCCCTTCCATATGGCAGGAGTAGC 169050 | | |||||||| || ||||| |||| |||| |||| || || || ||| ||| ||||| Sbjct 155532 GATTGTATTCCAGGCTGAGCAGAACA-TCTTTTGCACCCATTTCACATGTTAGGTGTAGC 155590 Query 169051 AGGTATGTTCGGTGGATCTCTATTC 169075 ||| | ||| |||| || || ||| Sbjct 155591 TGGTGTATTCAGTGGCTCCCTCTTC 155615 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 563695104817440