Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Juglans_20regia_20[refseq_20GCF_5F001411555.1_202015-10-22] 105,803 sequences; 699,672,627 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq1861 268 1e-66 seq47040 120 4e-22 seq54963 114 2e-20 >seq1861 Length=68153 Score = 268 bits (296), Expect = 1e-66 Identities = 661/1002 (66%), Gaps = 47/1002 (5%) Strand=Plus/Plus Query 172951 TTTGATGTTCTTGACGACTGGTTAAAGAGAGATCGTTTCGTATTCATCGGATGGTCTGGT 173010 |||||| || | || ||||||||| ||| || | |||||| || | || ||||| ||| Sbjct 26949 TTTGATATTATGGATGACTGGTTACGGAGGGACCATTTCGTTTTTGTAGGTTGGTCCGGT 27008 Query 173011 CTTTTACTTCTACCTTGTGCTTACCTTTCTATCGGTGGTTGGTTCTTAGGAACTACCTTC 173070 || ||||| | |||||||| || || | | || |||||||| ||| || ||||| Sbjct 27009 CTATTACTCTTTCCTTGTGCCTATTTTGCCTTAGGGGGTTGGTTTACAGGTACAACCTTT 27068 Query 173071 GTTACATCATGGTATACACATGGTATTGCATCTTCATATCTTGAAGGAGCAAACTTTTTA 173130 || || |||| ||||||||| || | || ||| ||| | ||||| ||||| ||| Sbjct 27069 GTAACTTCATAGTATACACACGGATTGGCGAGTTCCTATTTGGAAGGCTGCAACTTCTTA 27128 Query 173131 ACAGCAGCAGTCTCCACACCTGGCGACGCAATGGGT---CATAGTCTTC--TGTTCCTTT 173185 || || ||||| || || | | || | || | | || | |||| |||| || | Sbjct 27129 ACCGCTGCAGTTTCTACTC-TCGCTA----ATAGTTTAGCACACTCTTTGTTGTTACTAT 27183 Query 173186 GGGGACCTGAAGCACAAGGTTCATTCGTAC--GTTGGTTACAACTCGGAGGACTATGGAA 173243 |||| || ||| ||||||| || ||| |||||| ||| | || | || |||| Sbjct 27184 GGGGTCCAGAAACACAAGGAGATTT--TACTTGTTGGTGTCAATTAGGTAGTCTGTGGAC 27241 Query 173244 CTTTGTAGCATTACATGGAGTCTTTGGACTCATAGGTTTCATGCTCCGTCAGTTTGAGAT 173303 ||||| || ||| |||||| |||||| ||| | | ||| ||||||| | Sbjct 27242 TTTTGTTGC-----------TCTCTGGACTAATAGGTCTCACGTTACGTTAGTTTGAACT 27290 Query 173304 CGCAGGACTTGTAGGCATCAGACCTTACAACGCACTCGCATTCTCTGCTGTTATCGCAGT 173363 || || ||| | ||||||| || ||| |||||||||||||| || || | Sbjct 27291 TGCTCGATCTGTTCAATTGCGACCTTATAATGCAATCGCATTCTCTGCTCCAATTGCTTT 27350 Query 173364 CTTCACTAGCATCTTTTTAATCTACCCACTAGGGCAGCACAGTTGGTTCTTCGCACCTTC 173423 || | | || | || || | |||||| || |||||||||| | ||| Sbjct 27351 TTTTTTTTTGGTATTGCTGATTTATCTACTAGGTCAATCGGGTTGGTTCTTTGTGCCTAG 27410 Query 173424 ATTCGGTGTCGCAGCAATCTTTCGTTATATCTTATTCATACAAGGTTTCCACAACATTAC 173483 || ||||| ||||| || |||| || | ||| || | |||| || || || || Sbjct 27411 CTTTGGTGTAGCAGCTATATTTCATTCTTTCTCTTTT-TCTAAGGGTTTCATAATTGGAC 27469 Query 173484 ATTGAATCCATTTCACATGATGGGTGTTGCAGGAATACTAGGTGGAGCATTACTATGTGC 173543 |||||| |||||||| |||||||| ||||| || || | || | || | ||||| | Sbjct 27470 ATTGAACCCATTTCATATGATGGGGGTTGCTGGTGTAATTGGCGCTGCTCTGCTATGCGT 27529 Query 173544 CATTCATGGTGCAACAGTGCAGAACACATTGTATGAAGACACATCACAATATACTGAAGG 173603 ||||||||||| || | | | || || | ||||| || ||| || Sbjct 27530 TATTCATGGTGCTACCTTAGAAAGTACTTTATTTGAAG------------ATGGTGATGG 27577 Query 173604 TAAGATTCAATCCACAACTTTCAGAGCATTTGATCCTACACAGGAAGAAGAAACTTATAG 173663 | | | || || | || ||| | || || || | |||||||||||| Sbjct 27578 T---------GCAAATACATTTTGTGCTTTTAACCCAACTCAAGCTGAAGAAACTTATTC 27628 Query 173664 TATGATTACAGCGAACAGATTCTGGTCACAGATATTTGGTATCGCATTTTCAAACAAAAG 173723 ||| | || || ||| || ||||| || || ||||| | | ||||| || ||| | Sbjct 27629 AATGGTCACCGCTAACCACTTTTGGTCCCAAATCTTTGGGGTTACTTTTTCCAATAAACG 27688 Query 173724 ATTTTTACACTTCCTCATGTTGTTCGTACCTGTCATGGGTATGTGGACATCATCCATAGG 173783 | ||||| ||||| ||| | || |||| || | || | |||| | | || Sbjct 27689 TTGGTTACATTTCCTTATGCTATTTGTACTAGTAACCAGTTTATGGATGAGTGCTCTTGG 27748 Query 173784 TATCGTAGGTCTTGCACTTAACCTTAGAGCATACGACTTTGTATCTCAAGAGATAAGAGC 173843 | || ||||| || || ||||| | || || |||||||| ||||| || || | || Sbjct 27749 AGTAGTCGGTCTGGCTCTGAACCTACGTGCCTATGACTTTGTTTCTCAGGAAATCCGTGC 27808 Query 173844 AGCAGAAGATCCAGAGTTCGAGACTTTCTACACTAAGAATATACTTCTTAATGAAGGTAT 173903 || ||||||||| || || |||||||||||||| || ||||| ||| | ||||||||||| Sbjct 27809 AGTAGAAGATCCTGAATTTGAGACTTTCTACACAAAAAATATTCTTTTAAATGAAGGTAT 27868 Query 173904 GAGAGCATGGATGTCATCTGTAGATCAACCACATGAGAACTT 173945 || |||||| || |||||| || ||||| ||||| Sbjct 27869 TCATGCTTGGATGGAGGCTCAAGATCAGCCTCATGAAAACTT 27910 >seq47040 Length=8764 Score = 120 bits (132), Expect = 4e-22 Identities = 159/221 (72%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 172204 GTAGCATATTCAGCACCTGTATCAGCAGCATTTGCTGTGTTCCTTGTGTATCCATTCGGT 172263 || ||||||||||| ||||| |||| || | |||| ||| | | |||||| | ||| Sbjct 5687 GTTGCATATTCAGCTCCTGTTGCAGCTGCTACTACTGTTTTCTTGATCTATCCAATTGGT 5628 Query 172264 CAGGGTTCATTCTCTGATGGTATGCCACTAGGTATCTCAGGTACGTTCAACTTTATGTTC 172323 || || || ||| | |||| ||| ||||| || || ||||| |||||||| ||| | Sbjct 5627 CAAGGAAGCTTTTCTCACGGTAAGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATT 5568 Query 172324 GTGTTCCAAGCAGAGCATAACATTCTAATGCATCCTTTCCACATGGCAGGAGTAGCAGGA 172383 || ||||| || ||||| ||||| || ||||| || || || ||| ||| ||||| || Sbjct 5567 GTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCATATGTTAGGTGTAGCTGGT 5508 Query 172384 ATGTTTGGAGGATCTTTATTCTCAGCAATGCACGGTTCTTT 172424 | || || || | |||| || ||||| |||||||| Sbjct 5507 GTATTCGGCGGCTTCCTATTTAGTGCTATGCATGGTTCTTT 5467 >seq54963 Length=251348 Score = 114 bits (126), Expect = 2e-20 Identities = 158/221 (71%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 172204 GTAGCATATTCAGCACCTGTATCAGCAGCATTTGCTGTGTTCCTTGTGTATCCATTCGGT 172263 || ||||||||||| ||||| ||| || |||||| || | | |||||| | ||| Sbjct 117193 GTTGCATATTCAGCTCCTGTTGTAGCTGCTACTGCTGTTTTATTGATCTATCCAATTGGT 117252 Query 172264 CAGGGTTCATTCTCTGATGGTATGCCACTAGGTATCTCAGGTACGTTCAACTTTATGTTC 172323 || || || ||||| |||||||| ||||| || || ||||| |||||||| ||| | Sbjct 117253 CAAGGAAGCTTTTCTGACGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATT 117312 Query 172324 GTGTTCCAAGCAGAGCATAACATTCTAATGCATCCTTTCCACATGGCAGGAGTAGCAGGA 172383 || ||||| || ||||| ||||| || ||||| || || |||||| | | ||| || Sbjct 117313 GTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTACGTGTAATTGGT 117372 Query 172384 ATGTTTGGAGGATCTTTATTCTCAGCAATGCACGGTTCTTT 172424 | || || || || |||| | ||||| |||||||| Sbjct 117373 GTATTCGGCGGCTCCCTATTTAGTGTTATGCATGGTTCTTT 117413 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 587273480236080