Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Juglans_20regia_20[refseq_20GCF_5F001411555.1_202015-10-22] 105,803 sequences; 699,672,627 total letters Query= NC_015285.1 Length=174285 Score E Sequences producing significant alignments: (Bits) Value seq1861 343 2e-89 seq47040 150 2e-31 seq54963 145 8e-30 >seq1861 Length=68153 Score = 343 bits (380), Expect = 2e-89 Identities = 651/947 (69%), Gaps = 22/947 (2%) Strand=Plus/Plus Query 163621 TTTGATGTCCTGGATGACTGGCTTAAGCGCGATCGTTTCGTATTTATTGGTTGGTCTGGA 163680 |||||| | ||||||||||| | | | || | |||||| ||| | |||||||| || Sbjct 26949 TTTGATATTATGGATGACTGGTTACGGAGGGACCATTTCGTTTTTGTAGGTTGGTCCGGT 27008 Query 163681 TTACTACTTCTTCCCACTGCTTATATGGCAATTGGTGGCTGGCTTACTGGTACAACTTTC 163740 || |||| |||| ||| ||| | || | || || ||| |||| |||||||| || Sbjct 27009 CTATTACTCTTTCCTTGTGCCTATTTTGCCTTAGGGGGTTGGTTTACAGGTACAACCTTT 27068 Query 163741 GTTACGTCGTGGTACACCCATGGACTGGCAACTTCCTATCTTGAGGG-TGCTAATTTTCT 163799 || || || | ||| || || ||| |||| | ||||||| | || || ||| | || | | Sbjct 27069 GTAACTTCATAGTATACACACGGATTGGCGAGTTCCTATTTGGAAGGCTGCAACTTCT-T 27127 Query 163800 CACAGCGGCTGTGTCAACGCCTGCTGACGCTATGGGTCATTCTCTTCTTCTT-CTCTGGG 163858 || || || || || || | ||| | | | | || ||| || || || || |||| Sbjct 27128 AACCGCTGCAGTTTCTACTCTCGCTAATAGTTTAGCACACTCT-TTGTTGTTACTATGGG 27186 Query 163859 GTCCTGAGGCTCAGGGCGATTTCGTCCGCTGGATCCAACTTGGGGGACTCTGGAATTTTG 163918 |||| || | || || ||||| | ||| ||| | || | || |||| ||||| Sbjct 27187 GTCCAGAAACACAAGGAGATTTTACTTGTTGGTGTCAATTAGGTAGTCTGTGGACTTTTG 27246 Query 163919 TGGCACTCCACGGAGCCTTTGCTCTCATTGGTTTCATGCTTCGGCAATTTGAACTTGCTC 163978 | || ||| ||| || || ||| ||| | | || | ||||||||||||| Sbjct 27247 TTGCTCTCT--GGA---------CTAATAGGTCTCACGTTACGTTAGTTTGAACTTGCTC 27295 Query 163979 GC-CTGATTGGAATCAGACCCTACAATGCGATTGCTTTCTCTGGTCCTATTGCTGTCTTC 164037 | ||| || | | |||| || ||||| || || ||||||| ||| |||||| | || Sbjct 27296 GATCTG-TTCAATTGCGACCTTATAATGCAATCGCATTCTCTGCTCCAATTGCTTTTTTT 27354 Query 164038 GTTAGTGTCTTTCTCATCTACCCTCTGGGTCAATCAAGTTGGTTCTTCGCTCCATCTTTT 164097 || || || || || || | || |||||||| |||||||||| | || ||| Sbjct 27355 TTTTTGGTATTGCTGATTTATCTACTAGGTCAATCGGGTTGGTTCTTTGTGCCTAGCTTT 27414 Query 164098 GGAGTGGCAGCAATCTT-CAGA-TTCCTCTTATTCCTTCAAGGATTTCATAACTGGACTT 164155 || || ||||| || || || || ||||| ||| |||| |||||||| ||||| | Sbjct 27415 GGTGTAGCAGCTATATTTCATTCTTTCTCTTTTTCT---AAGGGTTTCATAATTGGACAT 27471 Query 164156 TGAACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGCGGAGCATTGCTATCTGCTA 164215 ||||||| || ||||||||||| ||||||||| || | |||| || |||||| | || Sbjct 27472 TGAACCCATTTCATATGATGGGGGTTGCTGGTGTAATTGGCGCTGCTCTGCTATGCGTTA 27531 Query 164216 TTCACGGAGTCACAGTTGAAAATACATTGTATGAAGATGGAGAACAAGCAAACACCTTTA 164275 |||| || | || | |||| ||| || | ||||||||| || ||||| || ||| Sbjct 27532 TTCATGGTGCTACCTTAGAAAGTACTTTATTTGAAGATGGTGATGGTGCAAATACATTTT 27591 Query 164276 AGGCGTTTGATTCGACACAGGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCT 164335 || ||| | | || || | ||||| |||||||| |||||||| || |||| ||| | Sbjct 27592 GTGCTTTTAACCCAACTCAAGCTGAAGAAACTTATTCAATGGTCACCGCTAACCACTTTT 27651 Query 164336 GGTCGCAGATCTTCGGTGTTGCGTTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGT 164395 |||| || ||||| || ||| | ||||| || || || ||| | ||||| | ||| | | Sbjct 27652 GGTCCCAAATCTTTGGGGTTACTTTTTCCAATAAACGTTGGTTACATTTCCTTATGCTAT 27711 Query 164396 TTGTGCCTGTTATGGGTCTATGGACATCCTCTATTGGCATTATTGGCCTTGCTCTCAATC 164455 |||| | || | || |||||| || |||| | | || || ||||| || | Sbjct 27712 TTGTACTAGTAACCAGTTTATGGATGAGTGCTCTTGGAGTAGTCGGTCTGGCTCTGAACC 27771 Query 164456 TTCGTGCTTACGATTTTGTAAGTCAAGAGATTAGAGCAGCAGAAGATCCTGAGTTCGAGA 164515 | ||||| || || ||||| ||| || || | |||| |||||||||||| || |||| Sbjct 27772 TACGTGCCTATGACTTTGTTTCTCAGGAAATCCGTGCAGTAGAAGATCCTGAATTTGAGA 27831 Query 164516 CTTTCTATACCAAGAACATCTTATTGAACGAAGGACTCCGTGCATGG 164562 ||||||| || || || || | || || ||||| | | ||| ||| Sbjct 27832 CTTTCTACACAAAAAATATTCTTTTAAATGAAGGTATTCATGCTTGG 27878 >seq47040 Length=8764 Score = 150 bits (166), Expect = 2e-31 Identities = 167/223 (75%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 162769 GTAGCATACTCTGCACCTGTTGCAGCAGCATCGGCAGTCTTCCTGGTCTATCCTTTCGGT 162828 || ||||| || || ||||||||||| || | | || ||| || ||||||| | ||| Sbjct 5687 GTTGCATATTCAGCTCCTGTTGCAGCTGCTACTACTGTTTTCTTGATCTATCCAATTGGT 5628 Query 162829 CAAGGTTCTTTCTCTGACGCAATGCCCTTGGGTATCAGTGGTACATTCAACTACATGCTT 162888 ||||| || ||| ||| | ||| | || || |||||| ||||||| |||| || Sbjct 5627 CAAGGAAGCTTTTCTCACGGTAAGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATT 5568 Query 162889 GTCTTCCAAGCAGAGCACAACATTCTGATGCATCCCTTCCACATGTTGGGTGTCGCAGGT 162948 || ||||| || ||||||||||| || ||||| || || || ||||| ||||| || ||| Sbjct 5567 GTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCATATGTTAGGTGTAGCTGGT 5508 Query 162949 GTCTTCGGTGGTTCACTGTTCAGTGCAATGCACGGTTCTTTGG 162991 || ||||| || | || || ||||| ||||| |||||||||| Sbjct 5507 GTATTCGGCGGCTTCCTATTTAGTGCTATGCATGGTTCTTTGG 5465 >seq54963 Length=251348 Score = 145 bits (160), Expect = 8e-30 Identities = 166/223 (74%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 162769 GTAGCATACTCTGCACCTGTTGCAGCAGCATCGGCAGTCTTCCTGGTCTATCCTTTCGGT 162828 || ||||| || || ||||||| ||| || | || || || || ||||||| | ||| Sbjct 117193 GTTGCATATTCAGCTCCTGTTGTAGCTGCTACTGCTGTTTTATTGATCTATCCAATTGGT 117252 Query 162829 CAAGGTTCTTTCTCTGACGCAATGCCCTTGGGTATCAGTGGTACATTCAACTACATGCTT 162888 ||||| || ||||||| ||||| | || || |||||| ||||||| |||| || Sbjct 117253 CAAGGAAGCTTTTCTGACGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATT 117312 Query 162889 GTCTTCCAAGCAGAGCACAACATTCTGATGCATCCCTTCCACATGTTGGGTGTCGCAGGT 162948 || ||||| || ||||||||||| || ||||| || || |||||||| |||| ||| Sbjct 117313 GTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTACGTGTAATTGGT 117372 Query 162949 GTCTTCGGTGGTTCACTGTTCAGTGCAATGCACGGTTCTTTGG 162991 || ||||| || || || || |||| ||||| |||||||||| Sbjct 117373 GTATTCGGCGGCTCCCTATTTAGTGTTATGCATGGTTCTTTGG 117415 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556846574250600