Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Juglans_20regia_20[refseq_20GCF_5F001411555.1_202015-10-22] 105,803 sequences; 699,672,627 total letters Query= NC_015286.1 Length=175230 Score E Sequences producing significant alignments: (Bits) Value seq1861 443 2e-119 seq47040 178 1e-39 seq54963 163 3e-35 >seq1861 Length=68153 Score = 443 bits (490), Expect = 2e-119 Identities = 680/965 (70%), Gaps = 16/965 (2%) Strand=Plus/Plus Query 168495 GATGACTGGCTTAAACGGGATCGTTTCGTTTTTGTTGGTTGGTCTGGACTTCTTCTTTTT 168554 ||||||||| | |||| | |||||||||||| |||||||| || || | || ||| Sbjct 26961 GATGACTGGTTACGGAGGGACCATTTCGTTTTTGTAGGTTGGTCCGGTCTATTACTCTTT 27020 Query 168555 CCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGGACTGCTTTCGTCACGAGTTGG 168614 || ||| ||| |||| | || |||||| |||| || || | || || || | | Sbjct 27021 CCTTGTGCCTATTTTGCCTTAGGGGGTTGGTTTACAGGTACAACCTTTGTAACTTCATAG 27080 Query 168615 TATACTCACGGGTTGGCAAGTTCCTATCTGGAGGGCGCAAACTTTCTTACTGCGGCAGTT 168674 ||||| ||||| ||||| ||||||||| |||| ||| ||||| | || || |||||| Sbjct 27081 TATACACACGGATTGGCGAGTTCCTATTTGGAAGGCTGCAACTTCTTAACCGCTGCAGTT 27140 Query 168675 AGTACTCCAGCAGATTCTATGGGTCATTCTCTTCTGCTTCTCTGGGGTCCTGAGGCACAA 168734 ||||| || || | | | || ||| | || | || |||||||| || ||||| Sbjct 27141 TCTACTCTCGCTAATAGTTTAGCACACTCTTTGTTGTTACTATGGGGTCCAGAAACACAA 27200 Query 168735 GGGGATTTCGTCAGATGGTGTCAACTTGGAGGACTCTGGGCTTTTGTGGCGCTCCACGGG 168794 || ||||| | ||||||||| | || | || ||| ||||||| || ||| Sbjct 27201 GGAGATTTTACTTGTTGGTGTCAATTAGGTAGTCTGTGGACTTTTGTTGCTCTCT----- 27255 Query 168795 GCTTTCGCTCTAATCGGTTTCATGCTTCGTCAGTTTGAACTGGCACG-TCTCATCGGTAT 168853 | ||||| ||| ||| | | ||| |||||||||| || || ||| || | | Sbjct 27256 ------GGACTAATAGGTCTCACGTTACGTTAGTTTGAACTTGCTCGATCTGTTCAAT-T 27308 Query 168854 CCGTCCCTACAATGCTATTGCGTTCTCTGGTCCTATCGCTGTTTTTGTTAGCGTCTTTCT 168913 || || || ||||| || || ||||||| ||| || ||| ||||| || || || || Sbjct 27309 GCGACCTTATAATGCAATCGCATTCTCTGCTCCAATTGCTTTTTTTTTTTTGGTATTGCT 27368 Query 168914 CATCTACCCTCTGGGTCAATCGAGTTGGTTTTTCGCTCC-ATCTTTCGGGGTCTCAGCAA 168972 || || | || ||||||||| ||||||| || | || | |||| || || |||| | Sbjct 27369 GATTTATCTACTAGGTCAATCGGGTTGGTTCTTTGTGCCTAGCTTT-GGTGTAGCAGCTA 27427 Query 168973 TCTTCCGATTCCTTCTCTTCCTACAAGGATTCCATAACTGGACACTGAATCCATTTCATA 169032 | || | |||| ||||||| | |||| || ||||| |||||| |||| |||||||||| Sbjct 27428 TATTTC-ATTCTTTCTCTTTTTCTAAGGGTTTCATAATTGGACATTGAACCCATTTCATA 27486 Query 169033 TGATGGGTGTAGCAGGTATTTTGGGAGGAGCCTTGCTTTCTGCCATTCATGGTGTTACAG 169092 ||||||| || || ||| | | || | || |||| | | |||||||||| ||| Sbjct 27487 TGATGGGGGTTGCTGGTGTAATTGGCGCTGCTCTGCTATGCGTTATTCATGGTGCTACCT 27546 Query 169093 TAGAGAATACTCTGTATCAAGATGGTGAACAAGCAAATACTTTCAAAGCATTTGACAGCA 169152 |||| | |||| | | | |||||||||| |||||||| || || ||| || | Sbjct 27547 TAGAAAGTACTTTATTTGAAGATGGTGATGGTGCAAATACATTTTGTGCTTTTAACCCAA 27606 Query 169153 CTCAGGAAGAGGAGACCTATTCAATGGTTACTGCAAACCGTTTCTGGTCTCAGATCTTTG 169212 |||| | || || || ||||||||||| || || |||| || ||||| || ||||||| Sbjct 27607 CTCAAGCTGAAGAAACTTATTCAATGGTCACCGCTAACCACTTTTGGTCCCAAATCTTTG 27666 Query 169213 GTATTGCGTTCAGTAATAAGAGGTGGTTGCATTTCTTTATGCTGTTTGTTCCTGTTATGG 169272 | || | || ||||| | ||||| |||||| ||||||| ||||| | || | Sbjct 27667 GGGTTACTTTTTCCAATAAACGTTGGTTACATTTCCTTATGCTATTTGTACTAGTAACCA 27726 Query 169273 GTCTTTGGACAAGTTCCATCGGTATTATTGGTCTTGCTCTCAACCTTCGTGCTTATGACT 169332 || | |||| ||| | | || | | ||||| ||||| ||||| ||||| ||||||| Sbjct 27727 GTTTATGGATGAGTGCTCTTGGAGTAGTCGGTCTGGCTCTGAACCTACGTGCCTATGACT 27786 Query 169333 TTGTTTCCCAAGAGATCAGAGCAGCAGAAGATCCAGAGTTTGAGACGTTCTACACCAAGA 169392 ||||||| || || ||| | |||| ||||||||| || |||||||| |||||||| || | Sbjct 27787 TTGTTTCTCAGGAAATCCGTGCAGTAGAAGATCCTGAATTTGAGACTTTCTACACAAAAA 27846 Query 169393 ACATCCTCTTGAACGAAGGTCTTCGTGCATGGTTAGCACCTATTGATCAACCTCATGAGA 169452 | || || || || |||||| ||| ||| ||| | | || ||||| |||||||| | Sbjct 27847 ATATTCTTTTAAATGAAGGTATTCATGCTTGGATGGAGGCTCAAGATCAGCCTCATGAAA 27906 Query 169453 ACTTT 169457 ||||| Sbjct 27907 ACTTT 27911 >seq47040 Length=8764 Score = 178 bits (196), Expect = 1e-39 Identities = 173/223 (78%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 167472 GTTGCATACTCTGCTCCAGTCGCTGCAGCATCTGCTGTATTCCTCGTCTATCCTTTCGGT 167531 |||||||| || ||||| || || || || || |||| ||| | ||||||| | ||| Sbjct 5687 GTTGCATATTCAGCTCCTGTTGCAGCTGCTACTACTGTTTTCTTGATCTATCCAATTGGT 5628 Query 167532 CAAGGTTCTTTCTCTGACGCGATGCCTCTTGGTATCTCTGGTACATTCAACTACATGCTT 167591 ||||| || ||| ||| | |||||| || || |||||||| ||||||| |||| || Sbjct 5627 CAAGGAAGCTTTTCTCACGGTAAGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATT 5568 Query 167592 GTCTTCCAAGCAGAGCACAACATCCTGATGCACCCCTTCCATATGCTCGGCGTTGCTGGC 167651 || ||||| || |||||||||||||| |||||||| || |||||| | || || ||||| Sbjct 5567 GTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCATATGTTAGGTGTAGCTGGT 5508 Query 167652 GTATTCGGCGGTTCTCTGTTCAGTGCAATGCACGGTTCTCTGG 167694 ||||||||||| | || || ||||| ||||| |||||| ||| Sbjct 5507 GTATTCGGCGGCTTCCTATTTAGTGCTATGCATGGTTCTTTGG 5465 >seq54963 Length=251348 Score = 163 bits (180), Expect = 3e-35 Identities = 170/223 (76%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 167472 GTTGCATACTCTGCTCCAGTCGCTGCAGCATCTGCTGTATTCCTCGTCTATCCTTTCGGT 167531 |||||||| || ||||| || | || || ||||||| || | ||||||| | ||| Sbjct 117193 GTTGCATATTCAGCTCCTGTTGTAGCTGCTACTGCTGTTTTATTGATCTATCCAATTGGT 117252 Query 167532 CAAGGTTCTTTCTCTGACGCGATGCCTCTTGGTATCTCTGGTACATTCAACTACATGCTT 167591 ||||| || ||||||| |||||||| || || |||||||| ||||||| |||| || Sbjct 117253 CAAGGAAGCTTTTCTGACGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATT 117312 Query 167592 GTCTTCCAAGCAGAGCACAACATCCTGATGCACCCCTTCCATATGCTCGGCGTTGCTGGC 167651 || ||||| || |||||||||||||| |||||||| || || ||| | | || ||| Sbjct 117313 GTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTACGTGTAATTGGT 117372 Query 167652 GTATTCGGCGGTTCTCTGTTCAGTGCAATGCACGGTTCTCTGG 167694 ||||||||||| || || || |||| ||||| |||||| ||| Sbjct 117373 GTATTCGGCGGCTCCCTATTTAGTGTTATGCATGGTTCTTTGG 117415 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 559866574897200