Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Juglans_20regia_20[refseq_20GCF_5F001411555.1_202015-10-22] 105,803 sequences; 699,672,627 total letters Query= NC_015287.1 Length=232878 Score E Sequences producing significant alignments: (Bits) Value seq47040 150 3e-31 seq54963 145 1e-29 seq2016 114 2e-20 >seq47040 Length=8764 Score = 150 bits (166), Expect = 3e-31 Identities = 164/218 (75%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 215678 GTTGCTTACTCCGCACCTGTATCTGCTGCCTTTGCAGTATTCCTTGTGTATCCATTCGGT 215737 ||||| || || || ||||| | ||||| | | || ||| | | |||||| | ||| Sbjct 5687 GTTGCATATTCAGCTCCTGTTGCAGCTGCTACTACTGTTTTCTTGATCTATCCAATTGGT 5628 Query 215738 CAGGGTTCTTTCTCTGATGCTATGCCACTTGGAATCTCTGGAACATTCAACTACATGTTT 215797 || || || ||| | | || ||| || ||||| ||||| || ||||||| |||| || Sbjct 5627 CAAGGAAGCTTTTCTCACGGTAAGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATT 5568 Query 215798 GTTTTCCAGGCTGAGCACAACATTCTGATGCACCCATTCCACATGTTAGGTGTGGCTGGT 215857 || |||||||||||||||||||| || ||||||||||| || ||||||||||| |||||| Sbjct 5567 GTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCATATGTTAGGTGTAGCTGGT 5508 Query 215858 GTCTTCGGTGGTTCATTGTTCTCTGCAATGCACGGTTC 215895 || ||||| || | | || ||| ||||| ||||| Sbjct 5507 GTATTCGGCGGCTTCCTATTTAGTGCTATGCATGGTTC 5470 >seq54963 Length=251348 Score = 145 bits (160), Expect = 1e-29 Identities = 163/218 (75%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 215678 GTTGCTTACTCCGCACCTGTATCTGCTGCCTTTGCAGTATTCCTTGTGTATCCATTCGGT 215737 ||||| || || || ||||| ||||| ||| || || | | |||||| | ||| Sbjct 117193 GTTGCATATTCAGCTCCTGTTGTAGCTGCTACTGCTGTTTTATTGATCTATCCAATTGGT 117252 Query 215738 CAGGGTTCTTTCTCTGATGCTATGCCACTTGGAATCTCTGGAACATTCAACTACATGTTT 215797 || || || ||||| | |||||| || ||||| ||||| || ||||||| |||| || Sbjct 117253 CAAGGAAGCTTTTCTGACGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATT 117312 Query 215798 GTTTTCCAGGCTGAGCACAACATTCTGATGCACCCATTCCACATGTTAGGTGTGGCTGGT 215857 || |||||||||||||||||||| || ||||||||||| ||||||||| |||| |||| Sbjct 117313 GTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTACGTGTAATTGGT 117372 Query 215858 GTCTTCGGTGGTTCATTGTTCTCTGCAATGCACGGTTC 215895 || ||||| || || | || || ||||| ||||| Sbjct 117373 GTATTCGGCGGCTCCCTATTTAGTGTTATGCATGGTTC 117410 >seq2016 Length=232386 Score = 114 bits (126), Expect = 2e-20 Identities = 101/125 (81%), Gaps = 1/125 (1%) Strand=Plus/Plus Query 215747 TTCTCTGATGCTATGCCACTTGGAATCTCTGGAACATTCAACTACATGTTTGTTTTCCAG 215806 || ||||||| |||||| | |||| || | || ||||| | |||| |||| |||||| Sbjct 155485 TTTTCTGATGGTATGCCTCCAGGAAGTTCGCGTACTTTCAAGTTCATGATTGTATTCCAG 155544 Query 215807 GCTGAGCACAACATTCTGATGCACCCATTCCACATGTTAGGTGTGGCTGGTGTCTTCGGT 215866 |||||||| |||| ||| |||||||||| |||||||||||||| |||||||| ||| || Sbjct 155545 GCTGAGCAGAACA-TCTTTTGCACCCATTTCACATGTTAGGTGTAGCTGGTGTATTCAGT 155603 Query 215867 GGTTC 215871 || || Sbjct 155604 GGCTC 155608 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 744096201643440