Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Juglans_20regia_20[refseq_20GCF_5F001411555.1_202015-10-22] 105,803 sequences; 699,672,627 total letters Query= NC_015288.1 Length=191195 Score E Sequences producing significant alignments: (Bits) Value seq1861 414 1e-110 seq47040 163 3e-35 seq54963 159 4e-34 >seq1861 Length=68153 Score = 414 bits (458), Expect = 1e-110 Identities = 661/944 (70%), Gaps = 20/944 (2%) Strand=Plus/Plus Query 183217 TTTGTCTTTGTGGGCTGGTCTGGACTCCTACTTCTTCCCACTGCTTATCTTGCCATTGGC 183276 || || ||||| || ||||| || || |||| |||| ||| ||| ||||| | || Sbjct 26985 TTCGTTTTTGTAGGTTGGTCCGGTCTATTACTCTTTCCTTGTGCCTATTTTGCCTTAGGG 27044 Query 183277 GGTTGGCTTACTGGCACAGCTTTTGTTACGAGTTGGTATACCCATGGACTTGCTTCTTCC 183336 |||||| |||| || ||| | ||||| || | |||||| || ||| | || |||| Sbjct 27045 GGTTGGTTTACAGGTACAACCTTTGTAACTTCATAGTATACACACGGATTGGCGAGTTCC 27104 Query 183337 TATCTTGAAGG-TGCTAACTTTCTTACGGCAGCTGTCTCGACGCCTGCTGACGCTATGGG 183395 ||| | ||||| ||| ||||| | || || || || || || | ||| | | | | Sbjct 27105 TATTTGGAAGGCTGC-AACTTCTTAACCGCTGCAGTTTCTACTCTCGCTAATAGTTTAGC 27163 Query 183396 TCATTCTCTTCTGTTACTTTGGGGTCCTGAGTCTCAAGGGGACTTTCAACGCTGGTGCCA 183455 || ||| | ||||||| |||||||| || | ||||| || ||| | ||||| || Sbjct 27164 ACACTCTTTGTTGTTACTATGGGGTCCAGAAACACAAGGAGATTTTACTTGTTGGTGTCA 27223 Query 183456 ACTTGGGGGACTCTGGAATTTTGTGGCACTCCACGGTGCCTTTGCTCTCATTGGTTTCAT 183515 | | || | || |||| |||||| || ||| || || || ||| ||| Sbjct 27224 ATTAGGTAGTCTGTGGACTTTTGTTGCTCTC-----------TGGACTAATAGGTCTCAC 27272 Query 183516 GCTTCGACAGTTTGAACTTGCTCGCTTGATTGGTATCCGTCCTTACAATGCTATTGCGTT 183575 | | || |||||||||||||||| | || | || ||||| ||||| || || || Sbjct 27273 GTTACGTTAGTTTGAACTTGCTCGATCTGTTCAATTGCGACCTTATAATGCAATCGCATT 27332 Query 183576 CTCTGGTCCTATTGCTGTTTTTGTCAGTGTATTCCTTATCTATCCACTGGGTCAGTCTTC 183635 ||||| ||| |||||| ||||| | ||||| || || |||| ||| ||||| || Sbjct 27333 CTCTGCTCCAATTGCTTTTTTTTTTTTGGTATTGCTGATTTATCTACTAGGTCAATCGGG 27392 Query 183636 ATGGTTCTTTGCACCTAGTTTCGGGGTAGCAGCAATCTTTAGATTC---CTATTGTTCCT 183692 |||||||||| ||||| || || |||||||| || ||| |||| || || ||| Sbjct 27393 TTGGTTCTTTGTGCCTAGCTTTGGTGTAGCAGCTATATTTC-ATTCTTTCTCTTTTTC-- 27449 Query 183693 TCAGGGTTTCCACAACTGGACGTTAAACCCCTTCCATATGATGGGAGTTGCTGGTATACT 183752 | |||||||| | || ||||| || ||||| || ||||||||||| ||||||||| || | Sbjct 27450 TAAGGGTTTC-ATAATTGGACATTGAACCCATTTCATATGATGGGGGTTGCTGGTGTAAT 27508 Query 183753 AGGAGGAGCACTACTCAGTGCTATCCATGGTGTCACAGTAGAGAATACATTGTATGAAGA 183812 || | || || || | | ||| ||||||| || |||| | ||| || | |||||| Sbjct 27509 TGGCGCTGCTCTGCTATGCGTTATTCATGGTGCTACCTTAGAAAGTACTTTATTTGAAGA 27568 Query 183813 TGGAGAACAAGCAAACACATTCAAGGCATTTGATTCCACTCAAGAAGAAGAGACGTATTC 183872 ||| || ||||| ||||| || ||| | | ||||||| ||||| || ||||| Sbjct 27569 TGGTGATGGTGCAAATACATTTTGTGCTTTTAACCCAACTCAAGCTGAAGAAACTTATTC 27628 Query 183873 TATGGTTACAGCGAATCGTTTCTGGTCACAAATCTTCGGGGTTGCGTTTAGCAATAAGCG 183932 ||||| || || || | || ||||| |||||||| |||||| | ||| |||||| || Sbjct 27629 AATGGTCACCGCTAACCACTTTTGGTCCCAAATCTTTGGGGTTACTTTTTCCAATAAACG 27688 Query 183933 TTGGTTGCACTTCTTTATGTTGTTTGTTCCTGTCATGGGTCTTTGGGTCTCTTCTATTGG 183992 |||||| || ||| ||||| | ||||| | || | || | ||| | | || |||| Sbjct 27689 TTGGTTACATTTCCTTATGCTATTTGTACTAGTAACCAGTTTATGGATGAGTGCTCTTGG 27748 Query 183993 CATCATTGGGCTTGCTCTTAATCTTCGTGCTTATGATTTTGTAAGTCAAGAGATCAGAGC 184052 | | || || ||||| || || ||||| ||||| ||||| ||| || ||| | || Sbjct 27749 AGTAGTCGGTCTGGCTCTGAACCTACGTGCCTATGACTTTGTTTCTCAGGAAATCCGTGC 27808 Query 184053 AGCAGAAGATCCAGAATTTGAGACGTTCTACACAAAGAACATACTTCTTAATGAAGGACT 184112 || ||||||||| ||||||||||| ||||||||||| || || ||| | |||||||| | Sbjct 27809 AGTAGAAGATCCTGAATTTGAGACTTTCTACACAAAAAATATTCTTTTAAATGAAGGTAT 27868 Query 184113 ACGTGCATGGTTAGCACCTTCTGATCAACCACATGAGAATTTTA 184156 | ||| ||| | | || ||||| || ||||| || |||| Sbjct 27869 TCATGCTTGGATGGAGGCTCAAGATCAGCCTCATGAAAACTTTA 27912 >seq47040 Length=8764 Score = 163 bits (180), Expect = 3e-35 Identities = 170/223 (76%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 182178 GTAGCATACTCTGCTCCAGTCGCTGCAGCATCTGCTGTATTCTTAGTCTATCCTTTCGGT 182237 || ||||| || ||||| || || || || || |||| ||||| ||||||| | ||| Sbjct 5687 GTTGCATATTCAGCTCCTGTTGCAGCTGCTACTACTGTTTTCTTGATCTATCCAATTGGT 5628 Query 182238 CAAGGTTCGTTCTCCGATGCAATGCCCCTCGGAATCTCAGGAACATTCAACTATATGTTG 182297 ||||| || || | | | ||| || ||||| || || || ||||||| ||| | Sbjct 5627 CAAGGAAGCTTTTCTCACGGTAAGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATT 5568 Query 182298 GTTTTCCAAGCTGAGCACAACATTCTTATGCATCCCTTCCACATGTTGGGTGTAGCAGGT 182357 || ||||| |||||||||||||| |||||||| || || || ||||| |||||||| ||| Sbjct 5567 GTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCATATGTTAGGTGTAGCTGGT 5508 Query 182358 GTATTCGGTGGTTCACTGTTTAGTGCAATGCACGGTTCTTTGG 182400 |||||||| || | || |||||||| ||||| |||||||||| Sbjct 5507 GTATTCGGCGGCTTCCTATTTAGTGCTATGCATGGTTCTTTGG 5465 >seq54963 Length=251348 Score = 159 bits (176), Expect = 4e-34 Identities = 169/223 (76%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 182178 GTAGCATACTCTGCTCCAGTCGCTGCAGCATCTGCTGTATTCTTAGTCTATCCTTTCGGT 182237 || ||||| || ||||| || | || || ||||||| || || ||||||| | ||| Sbjct 117193 GTTGCATATTCAGCTCCTGTTGTAGCTGCTACTGCTGTTTTATTGATCTATCCAATTGGT 117252 Query 182238 CAAGGTTCGTTCTCCGATGCAATGCCCCTCGGAATCTCAGGAACATTCAACTATATGTTG 182297 ||||| || || || | ||||| || ||||| || || || ||||||| ||| | Sbjct 117253 CAAGGAAGCTTTTCTGACGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATT 117312 Query 182298 GTTTTCCAAGCTGAGCACAACATTCTTATGCATCCCTTCCACATGTTGGGTGTAGCAGGT 182357 || ||||| |||||||||||||| |||||||| || || |||||||| ||||| ||| Sbjct 117313 GTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTACGTGTAATTGGT 117372 Query 182358 GTATTCGGTGGTTCACTGTTTAGTGCAATGCACGGTTCTTTGG 182400 |||||||| || || || ||||||| ||||| |||||||||| Sbjct 117373 GTATTCGGCGGCTCCCTATTTAGTGTTATGCATGGTTCTTTGG 117415 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 610887009101400