Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Juglans_20regia_20[refseq_20GCF_5F001411555.1_202015-10-22] 105,803 sequences; 699,672,627 total letters Query= NC_015289.1 Length=176184 Score E Sequences producing significant alignments: (Bits) Value seq1861 398 9e-106 seq47040 149 7e-31 seq54963 145 9e-30 seq2016 98.7 1e-15 >seq1861 Length=68153 Score = 398 bits (440), Expect = 9e-106 Identities = 654/936 (70%), Gaps = 18/936 (2%) Strand=Plus/Plus Query 166196 TTTCGTTTTTGTTGGTTGGTCTGGACTTCTTCTTCTTCCCACTGCTTATCTTGCTATTGG 166255 |||||||||||| |||||||| || || | || |||| ||| ||| |||| | || Sbjct 26984 TTTCGTTTTTGTAGGTTGGTCCGGTCTATTACTCTTTCCTTGTGCCTATTTTGCCTTAGG 27043 Query 166256 CGGTTGGCTCACTGGGACTACTTTCGTCACGAGTTGGTATACTCATGGACTCGCAAGCAG 166315 |||||| | || || || || || || || | |||||| || ||| | || || Sbjct 27044 GGGTTGGTTTACAGGTACAACCTTTGTAACTTCATAGTATACACACGGATTGGCGAGTTC 27103 Query 166316 TTATCTGGAGGG-TGCAAACTTTCTTACTGCGGCAGTTTCTACTCCAGCAGATGCTATGG 166374 ||| |||| || ||||| ||| | || || ||||||||||||| || || | | | Sbjct 27104 CTATTTGGAAGGCTGCAA-CTTCTTAACCGCTGCAGTTTCTACTCTCGCTAATAGTTTAG 27162 Query 166375 GTCATTCTCTACTTCTTCTCTGGGGTCCTGAGGCTCAAGGGGATTTCGTCAGGTGGTGCC 166434 || ||| | | | || |||||||| || | ||||| ||||| | ||||| | Sbjct 27163 CACACTCTTTGTTGTTACTATGGGGTCCAGAAACACAAGGAGATTTTACTTGTTGGTGTC 27222 Query 166435 AACTTGGAGGGCTTTGGGCCTTTGTTGCTCTCCACGGTGCTTTTGCCCTAATTGGTTTCA 166494 || | || | || ||| | |||||||||||| || ||||| ||| ||| Sbjct 27223 AATTAGGTAGTCTGTGGACTTTTGTTGCTCTC-----------TGGACTAATAGGTCTCA 27271 Query 166495 TGCTTCGGCAGTTTGAAATCGCTCG-TCTAGTAGGTATTCGTCCGTACAATGCAATCGCT 166553 | | || |||||||| | ||||| ||| | | | || || || ||||||||||| Sbjct 27272 CGTTACGTTAGTTTGAACTTGCTCGATCTGTTCAAT-TGCGACCTTATAATGCAATCGCA 27330 Query 166554 TTTTCTGGTCCTATTGCTGTCTTCGTTAGTGTCTTTCTCATCTACCCTCTGGGTCAATCG 166613 || |||| ||| |||||| | || || || || || || || | || ||||||||| Sbjct 27331 TTCTCTGCTCCAATTGCTTTTTTTTTTTTGGTATTGCTGATTTATCTACTAGGTCAATCG 27390 Query 166614 AGTTGGTTTTTCGCTCC-ATCTTTCGGGGTCTCAGCAATCTTCCGATTCCTCCTTTTCCT 166672 ||||||| || | || | |||| || || |||| || || | |||| | || || | Sbjct 27391 GGTTGGTTCTTTGTGCCTAGCTTT-GGTGTAGCAGCTATATTTC-ATTCTTTCTCTTTTT 27448 Query 166673 TCAAGGATTCCACAACTGGACACTGAACCCATTTCATATGATGGGTGTAGCAGGTATTCT 166732 |||| || || || |||||| |||||||||||||||||||||| || || ||| | | Sbjct 27449 CTAAGGGTTTCATAATTGGACATTGAACCCATTTCATATGATGGGGGTTGCTGGTGTAAT 27508 Query 166733 CGGTGGTGCATTGCTTTCTGCCATCCATGGTGTTACAGTAGAGAACACTCTGTATCAAGA 166792 || | ||| |||| | | || ||||||| ||| |||| | ||| | | | |||| Sbjct 27509 TGGCGCTGCTCTGCTATGCGTTATTCATGGTGCTACCTTAGAAAGTACTTTATTTGAAGA 27568 Query 166793 TGGTGAACAGGCAAATACTTTCAAGGCATTCGACTCTACTCAAGAGGAAGAAACCTATTC 166852 |||||| |||||||| || || || || | ||||||| |||||||| ||||| Sbjct 27569 TGGTGATGGTGCAAATACATTTTGTGCTTTTAACCCAACTCAAGCTGAAGAAACTTATTC 27628 Query 166853 AATGGTTACAGCAAACCGCTATTGGTCTCAGATCTTCGGTATTGCGTTTAGTAATAAGAG 166912 |||||| || || |||| || |||||| || ||||| || || | ||| ||||| | Sbjct 27629 AATGGTCACCGCTAACCACTTTTGGTCCCAAATCTTTGGGGTTACTTTTTCCAATAAACG 27688 Query 166913 GTGGTTGCATTTCTTTATGCTGTTTGTTCCTGTTATGGGTCTGTGGACAAGTTCCATCGG 166972 ||||| |||||| ||||||| ||||| | || | || | |||| ||| | | || Sbjct 27689 TTGGTTACATTTCCTTATGCTATTTGTACTAGTAACCAGTTTATGGATGAGTGCTCTTGG 27748 Query 166973 TATTATTGGTCTTGCTCTCAACCTTCGTGCTTATGACTTTGTTTCCCAAGAACTAAGGGC 167032 | | ||||| ||||| ||||| ||||| |||||||||||||| || ||| | | || Sbjct 27749 AGTAGTCGGTCTGGCTCTGAACCTACGTGCCTATGACTTTGTTTCTCAGGAAATCCGTGC 27808 Query 167033 AGCAGAGGATCCTGAGTTTGAAACCTTCTATACCAAGAACATTCTCTTGAATGAGGGTAT 167092 || ||| |||||||| ||||| || ||||| || || || ||||| || ||||| ||||| Sbjct 27809 AGTAGAAGATCCTGAATTTGAGACTTTCTACACAAAAAATATTCTTTTAAATGAAGGTAT 27868 Query 167093 GCGTTCTTGGATGGCAACTATCGATCAACCTCATGA 167128 | | ||||||||| || ||||| |||||||| Sbjct 27869 TCATGCTTGGATGGAGGCTCAAGATCAGCCTCATGA 27904 >seq47040 Length=8764 Score = 149 bits (164), Expect = 7e-31 Identities = 162/215 (75%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 165148 GTAGCATATAGCGCACCTGTCGCTGCTGCTGCCGCAGTTTTCCTGGTCTATCCTTTCGGT 165207 || |||||| || ||||| || |||||| | | |||||| || ||||||| | ||| Sbjct 5687 GTTGCATATTCAGCTCCTGTTGCAGCTGCTACTACTGTTTTCTTGATCTATCCAATTGGT 5628 Query 165208 CAAGGGAGTTTCTCTGATGGTATGCCTCTTGGTATCTCTGGTACTTTTAACTATATGTTC 165267 ||||| || || ||| | |||| |||||| || || ||||||||||| |||| ||| | Sbjct 5627 CAAGGAAGCTTTTCTCACGGTAAGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATT 5568 Query 165268 GTCTTCCAAGCAGAACATAACATTCTTATGCATCCGTTCCACATGCTCGGCGTTGCTGGG 165327 || ||||| || || || ||||| |||||||| || || || ||| | || || ||||| Sbjct 5567 GTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCATATGTTAGGTGTAGCTGGT 5508 Query 165328 GTATTCGGTGGATCTCTTTTCTCTGCTATGCATGG 165362 |||||||| || | || || |||||||||||| Sbjct 5507 GTATTCGGCGGCTTCCTATTTAGTGCTATGCATGG 5473 >seq54963 Length=251348 Score = 145 bits (160), Expect = 9e-30 Identities = 161/215 (75%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 165148 GTAGCATATAGCGCACCTGTCGCTGCTGCTGCCGCAGTTTTCCTGGTCTATCCTTTCGGT 165207 || |||||| || ||||| | |||||| | || ||||| || ||||||| | ||| Sbjct 117193 GTTGCATATTCAGCTCCTGTTGTAGCTGCTACTGCTGTTTTATTGATCTATCCAATTGGT 117252 Query 165208 CAAGGGAGTTTCTCTGATGGTATGCCTCTTGGTATCTCTGGTACTTTTAACTATATGTTC 165267 ||||| || || ||||| ||||||||||| || || ||||||||||| |||| ||| | Sbjct 117253 CAAGGAAGCTTTTCTGACGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATT 117312 Query 165268 GTCTTCCAAGCAGAACATAACATTCTTATGCATCCGTTCCACATGCTCGGCGTTGCTGGG 165327 || ||||| || || || ||||| |||||||| || || |||||| | | || ||| Sbjct 117313 GTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTACGTGTAATTGGT 117372 Query 165328 GTATTCGGTGGATCTCTTTTCTCTGCTATGCATGG 165362 |||||||| || || || || || ||||||||| Sbjct 117373 GTATTCGGCGGCTCCCTATTTAGTGTTATGCATGG 117407 >seq2016 Length=232386 Score = 98.7 bits (108), Expect = 1e-15 Identities = 109/144 (76%), Gaps = 1/144 (1%) Strand=Plus/Plus Query 165205 GGTCAAGGGAGTTTCTCTGATGGTATGCCTCTTGGTATCTCTGGTACTTTTAACTATATG 165264 |||||||| || || |||||||||||||||| || | || ||||||| || | ||| Sbjct 155473 GGTCAAGGAAGCTTTTCTGATGGTATGCCTCCAGGAAGTTCGCGTACTTTCAAGTTCATG 155532 Query 165265 TTCGTCTTCCAAGCAGAACATAACATTCTTATGCATCCGTTCCACATGCTCGGCGTTGCT 165324 | || ||||| || || || |||| |||| |||| || || |||||| | || || ||| Sbjct 155533 ATTGTATTCCAGGCTGAGCAGAACA-TCTTTTGCACCCATTTCACATGTTAGGTGTAGCT 155591 Query 165325 GGGGTATTCGGTGGATCTCTTTTC 165348 || |||||| |||| || || ||| Sbjct 155592 GGTGTATTCAGTGGCTCCCTCTTC 155615 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562915337454720