Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Juglans_20regia_20[refseq_20GCF_5F001411555.1_202015-10-22] 105,803 sequences; 699,672,627 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq55116 127 1e-24 seq49365 113 3e-20 seq1014 98.7 6e-16 seq54980 93.3 3e-14 seq54652 93.3 3e-14 seq24692 93.3 3e-14 seq1025 91.5 1e-13 seq49028 89.7 3e-13 seq1533 87.8 1e-12 seq1868 84.2 1e-11 >seq55116 Length=591887 Score = 127 bits (140), Expect = 1e-24 Identities = 171/237 (72%), Gaps = 2/237 (1%) Strand=Plus/Plus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 || || ||||| | | ||||||||| | ||| ||||||||| |||||||| || | Sbjct 230427 CCACCTCTCAAACGTAGAACCAAGTGGAGGGTGGATTCTTTCTGGATGTTATAATCAGCT 230486 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 || |||| |||| || || || ||||| ||||| || || | ||||||||| | || Sbjct 230487 AGAGTTCGGCCATCCTCGAGTTGCTTTCCAGCAAAGATAAGCCTCTGCTGGTCTGGGGGA 230546 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934 | ||||||||||| || || ||||||| | || | ||| | ||| || Sbjct 230547 ATTCCCTCCTTGTCCTGTATTTTTGCTTTGACGTTATCAATAGTATCAGAGCTCTCCACC 230606 Query 34935 TCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATATTCGTAGAC 34991 |||| |||||||| ||||| || |||||||| |||||||||||||| | |||||| Sbjct 230607 TCGAGAGTTATGGTCTTTCCAGTAAGAGTCTTGACAAAGATCTGCATCT--GTAGAC 230661 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 34785 GTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCG 34844 ||||| |||||||||||||| || || | ||| | || |||| || || || || || Sbjct 229545 GTGCTCTCTTTCTGAATGTTGTAATCTGCCAGGGTGCGGCCATCTTCAAGTTGCTTCCCA 229604 Query 34845 GCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTG 34904 ||||| || || | ||||||||| | || | ||||||||| || || || |||| Sbjct 229605 GCAAAAATAAGCCTCTGCTGGTCTGGTGGGATCCCCTCCTTATCCTGTATTTTGGCTTTG 229664 Query 34905 ACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTC 34964 || | |||| ||| | ||| || || | ||| ||||| ||||| ||||| ||| Sbjct 229665 ACATTATCAATCGTATCAGAGCTCTCCACCTCAAGGGTGATGGTCTTTCCAGTGAGGGTC 229724 Query 34965 TTCACAAAGATCTGCAT 34981 || ||||| |||||||| Sbjct 229725 TTTACAAAAATCTGCAT 229741 >seq49365 Length=33059 Score = 113 bits (124), Expect = 3e-20 Identities = 166/233 (71%), Gaps = 8/233 (3%) Strand=Plus/Minus Query 34753 TTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCG 34812 |||||||||| | |||||| || | ||| | || || |||||||| || ||||| | Sbjct 27445 TTCCTCCCCTGAGCCTCAAGACGAGGTGGAGGGTCGACTCCTTCTGAATATTGTAGTCGG 27386 Query 34813 AAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCG 34872 |||| | || | || |||||||| || |||||||| || || | |||||||| | | Sbjct 27385 CAAGGGTACGGCCGTCCTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCCGGTG 27326 Query 34873 GCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGAT----TCACCGGCC 34928 | | ||||||||||| ||||| ||||| || ||||||| ||| | | Sbjct 27325 GGATACCCTCCTTGTCCTGGATCTTGGCCTTGAC--AT--TATCGATGGTGTCAGAGCTC 27270 Query 34929 TCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 ||||| || | ||| || || ||||||||||| || || || || |||||||| Sbjct 27269 TCAACCTCCAAGGTGATCGTCTTTCCCGTGAGGGTTTTGACGAAAATCTGCAT 27217 Score = 102 bits (112), Expect = 5e-17 Identities = 143/195 (73%), Gaps = 8/195 (4%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || || ||||| || ||||||| |||| | || |||| ||||| || || |||||||| Sbjct 27863 TCCTTTTGAATATTGTAGTCCGCAAGGGTGCGACCATCCTCCAGTTGCTTGCCGGCAAAA 27804 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || | |||||||| | || | |||||||||||| ||||| || || || Sbjct 27803 ATCAGCCTCTGCTGGTCAGGTGGGATCCCCTCCTTGTCCTGGATCTTGGCCTTCAC--AT 27746 Query 34911 GCTATCGAT--TCACCG-GC-CTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTT 34966 | ||||| | ||| || ||| || || | ||| ||||| || |||||||| ||||| Sbjct 27745 --TGTCGATGGTGTCCGAGCTCTCCACCTCAAGGGTGATGGTCTTGCCCGTGAGGGTCTT 27688 Query 34967 CACAAAGATCTGCAT 34981 ||| ||||||||||| Sbjct 27687 CACGAAGATCTGCAT 27673 >seq1014 Length=2264649 Score = 98.7 bits (108), Expect = 6e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||| | ||| || ||||||||||||||||| | ||| | | | |||| || Sbjct 109259 ACCAAGTGCAAGGTGGACTCCTTCTGAATGTTATAGTCAGCAAGAGTCCTTCCATCTTCT 109200 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 || || || || ||||| || | | ||||||||| | || | ||||||||||| | Sbjct 109199 AGTTGCTTCCCAGCAAAAATCAACCTCTGCTGGTCTGGTGGGATTCCCTCCTTGTCCTGA 109140 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 ||||| || || |||| | || | ||||| || | |||||| |||||| Sbjct 109139 ATCTTTGCCTTCACATTGTCTATAGTATCCGAGCTTTCAACTTCCAAGGTTATAGTTTTT 109080 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || || || ||||||||||| || ||||| Sbjct 109079 CCTGTCAGCGTCTTCACAAAAATTTGCAT 109051 Score = 91.5 bits (100), Expect = 1e-13 Identities = 140/196 (71%), Gaps = 8/196 (4%) Strand=Plus/Minus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||| |||||||| || || || | ||| | | |||| || ||||| || || ||||| Sbjct 109698 TTCCTTCTGAATATTGTAATCTGCAAGAGTCCTCCCATCTTCTAGCTGCTTGCCTGCAAA 109639 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || || | |||||||||| | || | ||||| ||||| ||||| ||||| | Sbjct 109638 GATAAGCCTTTGCTGGTCTGGAGGGATGCCCTCTTTGTCCTGTATCTTTGCCTTGAC--A 109581 Query 34910 TGCTATCGATTCA--CCGGCCT--CAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCT 34965 | | |||||| ||| || |||| |||| ||||||||||| || || | ||||| Sbjct 109580 T--TGTCGATTGTATCCGAACTTTCAACCTCGAGAGTTATGGTTTTACCAGTCAAAGTCT 109523 Query 34966 TCACAAAGATCTGCAT 34981 ||||||| |||||||| Sbjct 109522 TCACAAAAATCTGCAT 109507 >seq54980 Length=436967 Score = 93.3 bits (102), Expect = 3e-14 Identities = 139/195 (71%), Gaps = 8/195 (4%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||||||||| | | | | || | || || ||||| |||||||| || Sbjct 429165 TCCTTCTGGATGTTATAGTCGGCTAAGGTACGGCCGTCCTCGAGCTGCTTTCCGGCGAAG 429224 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || |||||||| |||| | ||||||||||| ||||| || || || Sbjct 429225 ATGAGACGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGGATCTTAGCCTTCAC--AT 429282 Query 34911 GCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTT 34966 | ||||| ||| || ||| || |||| ||| ||||| || || || || || || Sbjct 429283 --TGTCGATGGTGTCAGAGGACTCGACCTCGAGGGTGATGGTCTTCCCGGTTAGGGTTTT 429340 Query 34967 CACAAAGATCTGCAT 34981 ||| ||||||||||| Sbjct 429341 CACGAAGATCTGCAT 429355 >seq54652 Length=76240 Score = 93.3 bits (102), Expect = 3e-14 Identities = 139/195 (71%), Gaps = 8/195 (4%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| || || || || | | | |||| |||| || |||||||| || || || Sbjct 48110 TCCTTCTGGATATTGTAATCAGCTAAGGTTCGGCCATCCTCGAGCTGTTTCCCAGCGAAG 48051 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || |||||||| |||| | ||||||||||| ||||| || || || Sbjct 48050 ATGAGCCGCTGCTGGTCCGGCGGGATACCCTCCTTGTCTTGGATCTTGGCCTTAAC--AT 47993 Query 34911 GCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTT 34966 | ||||| || || |||||| |||| ||||||||| || ||||| || || || Sbjct 47992 --TGTCGATGGTGTCCGAGGACTCAACCTCGAGGGTTATGGTCTTCCCCGTTAGGGTTTT 47935 Query 34967 CACAAAGATCTGCAT 34981 ||| ||||||||||| Sbjct 47934 CACGAAGATCTGCAT 47920 >seq24692 Length=691 Score = 93.3 bits (102), Expect = 3e-14 Identities = 139/195 (71%), Gaps = 8/195 (4%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||||||||| | | | | || | || || ||||| |||||||| || Sbjct 232 TCCTTCTGGATGTTATAGTCGGCTAAGGTACGGCCGTCCTCGAGCTGCTTTCCGGCGAAG 173 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || |||||||| |||| | ||||||||||| ||||| || || || Sbjct 172 ATGAGACGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGGATCTTAGCCTTCAC--AT 115 Query 34911 GCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTT 34966 | ||||| ||| || ||| || |||| ||| ||||| || || || || || || Sbjct 114 --TGTCGATGGTGTCAGAGGACTCGACCTCGAGGGTGATGGTCTTCCCGGTTAGGGTTTT 57 Query 34967 CACAAAGATCTGCAT 34981 ||| ||||||||||| Sbjct 56 CACGAAGATCTGCAT 42 >seq1025 Length=2429094 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/211 (70%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTC--CGAAAGGCTTCGTTCATCAT 34830 |||||||||| ||| ||| || || ||||||||||| | |||| | || |||| | Sbjct 1181669 ACCAAGTGAAGGGTGGATTCCTTTTGGATGTTATAGTCAGCCAAAG--TGCGACCATCTT 1181612 Query 34831 CCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGC 34890 | || || || || || || || || | |||||||||| | || | ||||| ||||| Sbjct 1181611 CAAGTTGCTTACCAGCGAAGATGAGCCTTTGCTGGTCTGGTGGGATACCCTCTTTGTCCT 1181552 Query 34891 TAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTT 34950 ||| || ||| || | || | ||| | || || || | ||| || || | Sbjct 1181551 GAATTTTGGCTTTTACATTGTCAATGGTGTCAGAGCTTTCCACCTCAAGGGTGATTGTCT 1181492 Query 34951 TTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 |||| ||||||||||| |||||||||||||| Sbjct 1181491 TTCCAGTGAGAGTCTTGACAAAGATCTGCAT 1181461 Score = 91.5 bits (100), Expect = 1e-13 Identities = 152/214 (71%), Gaps = 8/214 (4%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||| | || ||| || || ||||| || |||| |||| | || | || || Sbjct 1181897 ACCAAGTGGAGGGTTGATTCCTTTTGGATGTTGTAATCCGCAAGGGTCCGACCGTCTTCG 1181838 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| ||||| ||||| || || | ||||||||| | || | ||||||||||| Sbjct 1181837 AGCTGCTTTCCAGCAAAGATAAGCCTCTGCTGGTCTGGTGGGATACCCTCCTTGTCTTGG 1181778 Query 34893 ATCTTCTGTTTGACGGATGCTATCGAT--TCACCG-GC-CTCAACATCGACGGTTATGGT 34948 ||||| ||||| || |||| || | ||| || || || || | |||||||| Sbjct 1181777 ATCTTAGCCTTGAC--AT--TATCAATAGTGTCCGAGCTTTCGACCTCCAAAGTTATGGT 1181722 Query 34949 TTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 |||||| || || || || |||||||| |||||| Sbjct 1181721 TTTTCCAGTAAGGGTTTTAACAAAGATTTGCATA 1181688 >seq49028 Length=66169 Score = 89.7 bits (98), Expect = 3e-13 Identities = 138/195 (71%), Gaps = 8/195 (4%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||||||||| | | | | || | || || ||||| ||||| || || Sbjct 54992 TCCTTCTGGATGTTATAGTCGGCTAAGGTACGGCCGTCCTCGAGCTGCTTTCCAGCGAAG 54933 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || |||||||| |||| | ||||||||||| ||||| || || || Sbjct 54932 ATGAGACGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGGATCTTAGCCTTCAC--AT 54875 Query 34911 GCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTT 34966 | ||||| ||| || ||| || |||| ||| ||||| || || || || || || Sbjct 54874 --TGTCGATGGTGTCAGAGGACTCGACCTCGAGGGTGATGGTCTTCCCGGTTAGGGTTTT 54817 Query 34967 CACAAAGATCTGCAT 34981 ||| ||||||||||| Sbjct 54816 CACGAAGATCTGCAT 54802 >seq1533 Length=248107 Score = 87.8 bits (96), Expect = 1e-12 Identities = 140/197 (71%), Gaps = 12/197 (6%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCG--AAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAA 34848 || ||||| ||||| ||||| | |||| |||| |||| || |||||||| || || | Sbjct 239999 TCCTTCTGTATGTTGTAGTCGGCTAAAG--TTCGGCCATCCTCGAGCTGTTTCCCAGCGA 239942 Query 34849 ATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGG 34908 | || || || ||||| || |||| | |||||||| || ||||| ||||| Sbjct 239941 AGATGAGGCGCTGCTGATCCGGCGGGATGCCCTCCTTATCTTGGATCTTGGCCTTGAC-- 239884 Query 34909 ATGCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTC 34964 || | ||||| || || ||| || || | ||||||||| || ||||| || || Sbjct 239883 AT--TGTCGATGGTATCCGAGGACTCGACCTCTAGGGTTATGGTCTTCCCCGTTAGGGTT 239826 Query 34965 TTCACAAAGATCTGCAT 34981 ||||| ||||||||||| Sbjct 239825 TTCACGAAGATCTGCAT 239809 >seq1868 Length=298818 Score = 84.2 bits (92), Expect = 1e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||||||||||||||| | |||| | || |||| |||| || || ||||| || Sbjct 224117 TCCTTCTGAATGTTATAGTCGGCAAGGGTGCGACCATCCTCCAATTGCTTGCCGGCGAAG 224058 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || ||||| || | || | || |||||||| ||||| |||||| Sbjct 224057 ATCAGACGCTGCTGATCGGGAGGGATACCTTCCTTGTCCTGGATCTTGGCCTTGACGTTG 223998 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | || ||| || |||| ||| ||||| || || ||||| || || || Sbjct 223997 TCGATGGTGTCGGAACTCTCGACCTCGAGGGTGATGGTCTTCCCGGTGAGGGTTTTGACG 223938 Query 34971 AAGATCTGCAT 34981 ||||||||||| Sbjct 223937 AAGATCTGCAT 223927 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324214993392984