Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Juglans_20regia_20[refseq_20GCF_5F001411555.1_202015-10-22] 105,803 sequences; 699,672,627 total letters Query= NC_015569.1 Length=178563 Score E Sequences producing significant alignments: (Bits) Value seq47040 150 2e-31 seq54963 145 9e-30 seq2016 95.1 1e-14 >seq47040 Length=8764 Score = 150 bits (166), Expect = 2e-31 Identities = 164/218 (75%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 84354 GAACCATGCATTGCAGAGAATAGAGCTCCACCGAATACACCAGCAACTCCCAACATGTGA 84413 ||||||||||| ||| ||||| || |||||||||||||| || || ||||| ||| Sbjct 5470 GAACCATGCATAGCACTAAATAGGAAGCCGCCGAATACACCAGCTACACCTAACATATGA 5529 Query 84414 AAGGGATGCATAAGGATGTTATGTTCCGCCTGGAAGACAAGCATGTAGTTGAACGTTCCT 84473 || || |||||||||||||| || || |||||||| |||| |||| ||||||| || || Sbjct 5530 AATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAATACAATCATGAAGTTGAAAGTACCA 5589 Query 84474 GAGATACCAAGTGGCATGCCATCAGAGAAAGAACCTTGCCCGAAAGGATACACAAGGAAT 84533 || || || || ||| | || | ||| || ||||| || | ||||| | | ||| Sbjct 5590 GAAATTCCTAGAGGCTTACCGTGAGAAAAGCTTCCTTGACCAATTGGATAGATCAAGAAA 5649 Query 84534 ACAGCAGATGCCGCTGCAACTGGAGCAGAGTAAGCAAC 84571 |||| || || |||||||| ||||| || || ||||| Sbjct 5650 ACAGTAGTAGCAGCTGCAACAGGAGCTGAATATGCAAC 5687 >seq54963 Length=251348 Score = 145 bits (160), Expect = 9e-30 Identities = 163/218 (75%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 84354 GAACCATGCATTGCAGAGAATAGAGCTCCACCGAATACACCAGCAACTCCCAACATGTGA 84413 ||||||||||| || ||||| | || |||||||||||| || | ||||||||| Sbjct 117410 GAACCATGCATAACACTAAATAGGGAGCCGCCGAATACACCAATTACACGTAACATGTGA 117351 Query 84414 AAGGGATGCATAAGGATGTTATGTTCCGCCTGGAAGACAAGCATGTAGTTGAACGTTCCT 84473 || || |||||||||||||| || || |||||||| |||| |||| ||||||| || || Sbjct 117350 AATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAATACAATCATGAAGTTGAAAGTACCA 117291 Query 84474 GAGATACCAAGTGGCATGCCATCAGAGAAAGAACCTTGCCCGAAAGGATACACAAGGAAT 84533 || || || || ||||| || ||||| || ||||| || | ||||| | | || Sbjct 117290 GAAATTCCTAGAGGCATACCGTCAGAAAAGCTTCCTTGACCAATTGGATAGATCAATAAA 117231 Query 84534 ACAGCAGATGCCGCTGCAACTGGAGCAGAGTAAGCAAC 84571 ||||||| || ||| |||| ||||| || || ||||| Sbjct 117230 ACAGCAGTAGCAGCTACAACAGGAGCTGAATATGCAAC 117193 >seq2016 Length=232386 Score = 95.1 bits (104), Expect = 1e-14 Identities = 95/122 (78%), Gaps = 1/122 (1%) Strand=Plus/Minus Query 84381 CCACCGAATACACCAGCAACTCCCAACATGTGAAAGGGATGCATAAGGATGTTATGTTCC 84440 |||| |||||||||||| || || ||||||||||| || |||| || |||||| || || Sbjct 155605 CCACTGAATACACCAGCTACACCTAACATGTGAAATGGGTGCA-AAAGATGTTCTGCTCA 155547 Query 84441 GCCTGGAAGACAAGCATGTAGTTGAACGTTCCTGAGATACCAAGTGGCATGCCATCAGAG 84500 |||||||| |||| |||| | ||||| || | || | || | ||||| |||||||| Sbjct 155546 GCCTGGAATACAATCATGAACTTGAAAGTACGCGAACTTCCTGGAGGCATACCATCAGAA 155487 Query 84501 AA 84502 || Sbjct 155486 AA 155485 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570518069241240