Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Juglans_20regia_20[refseq_20GCF_5F001411555.1_202015-10-22] 105,803 sequences; 699,672,627 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq51957 86.0 7e-12 seq1889 84.2 2e-11 seq1451 84.2 2e-11 >seq51957 Length=105213 Score = 86.0 bits (94), Expect = 7e-12 Identities = 141/200 (71%), Gaps = 4/200 (2%) Strand=Plus/Minus Query 48360 CCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCA 48419 || |||||||| | ||| | || |||| || | || | || |||||| ||||| ||| Sbjct 20008 CCCCCTTGATCAACATAACGCGCCGTATCATTGAATACACGTAGCATTGGAACAATGCCA 19949 Query 48420 TTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAA 48479 || ||| | ||||| || || ||||||||||||| |||| | ||||| | || Sbjct 19948 TTGGATGTCCCATTTGTGCCACGAATATAACTTCCAGTAGCGCGAATATTGTGGACAGAG 19889 Query 48480 ATACCTATACCACCTGC-CATTT-TAGATATTAGAGCACACCGTTTAAGGGTATCATAAA 48537 | ||| || ||||| || |||| |||| || ||| || || | ||| ||||| | Sbjct 19888 ACACCAATTCCACCAGCTGATTTGCTGATAACAGCGCATTCC--TTCAAGGTGTCATATA 19831 Query 48538 TTCCTTCTATACTATCATCT 48557 | ||||| || ||||||||| Sbjct 19830 TACCTTCAATGCTATCATCT 19811 >seq1889 Length=778003 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 48599 AGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTT 48658 |||||||| |||||| | || || | |||||| | ||||| || || | ||| | Sbjct 333828 AGTTCCTGCATTAAAAAGGGTAGGGGTAGCATGAGTGAACCAACGCTGAGACATCAAATG 333887 Query 48659 ATATGTTTCAATAACAGAATCTATATCCCATTGATGTATACCTATAGATACACGCATTAA 48718 ||||| | || |||||| || || || || || ||||| | || || | |||||| Sbjct 333888 GTATGTCTTAAGAACAGAGTCCATGTCATCTTTGTGGATACCAACAGCAACTCTCATTAA 333947 Query 48719 CATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCCAA 48778 ||| | ||||| ||||| |||| || || | || ||||||||||| | || | Sbjct 333948 CATGTGCTGAGGCCTTTCCACAACCTTCCCATCAACCTTTAAAAGATATGACCTCTCAAG 334007 Query 48779 TGTTTTAAAACCAAAATAGTTGTA 48802 ||||| || |||||||| | ||| Sbjct 334008 AGTTTTGAAGCCAAAATAATCGTA 334031 >seq1451 Length=2232081 Score = 84.2 bits (92), Expect = 2e-11 Identities = 76/96 (79%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 18960 ACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAA 19019 ||| ||||| ||||||||||| ||||| |||||| |||| ||||| || || || || Sbjct 1232316 ACAAGCAAAGTCACAATGTAGGCCCTCATCTCTAGAAATCAGCTCATTTGAGAACGTCAA 1232375 Query 19020 ACCAGGCATCAGTCCTCttttttttAACCAGAATAT 19055 ||| ||||||| ||| || ||||| | |||||| || Sbjct 1232376 ACCTGGCATCATTCCCCTCTTTTTGAGCCAGAAAAT 1232411 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561365390032920