Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Juglans_20regia_20[refseq_20GCF_5F001411555.1_202015-10-22] 105,803 sequences; 699,672,627 total letters Query= NC_016658.1 Length=47741 Score E Sequences producing significant alignments: (Bits) Value seq47040 141 3e-29 seq54963 134 4e-27 seq2016 95.1 4e-15 >seq47040 Length=8764 Score = 141 bits (156), Expect = 3e-29 Identities = 165/218 (76%), Gaps = 6/218 (3%) Strand=Plus/Plus Query 5579 CCATGCATAGCAGCGAACA--AAGCTCCACCGAATACCCCAGCAACACCGAGCATGTGGA 5636 |||||||||||| || | ||| || |||||||| ||||| ||||| | ||| || | Sbjct 5473 CCATGCATAGCACTAAATAGGAAG--CCGCCGAATACACCAGCTACACCTAACATATGAA 5530 Query 5637 ACGGATGCATAAGGATATTGTGTTCTGCCTGGAATACGAACATAAAGTTAAAAGTACCAG 5696 | || ||||||||||| ||||| || ||||||||||| | ||| ||||| |||||||||| Sbjct 5531 ATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAATACAATCATGAAGTTGAAAGTACCAG 5590 Query 5697 AGATACCAAGAGGCATACCATCACTGAAACTTCCCTGTCCGAAAGGGTATACTAAAAATA 5756 | || || |||||| |||| | | || ||||| || || | || || | || || | Sbjct 5591 AAATTCCTAGAGGCTTACCGTGAGAAAAGCTTCCTTGACCAATTGGATAGATCAAGAAAA 5650 Query 5757 CTG-AGTAGGCTGCGGCAACCGGTGCTGAATATGCTAC 5793 | | |||| || || ||||| || ||||||||||| || Sbjct 5651 CAGTAGTA-GCAGCTGCAACAGGAGCTGAATATGCAAC 5687 >seq54963 Length=251348 Score = 134 bits (148), Expect = 4e-27 Identities = 161/216 (75%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 5579 CCATGCATAGCAGCGAACAAAGCTCCACCGAATACCCCAGCAACACCGAGCATGTGGAAC 5638 ||||||||| || || | | || |||||||| ||| |||| | |||||| || Sbjct 117407 CCATGCATAACACTAAATAGGGAGCCGCCGAATACACCAATTACACGTAACATGTGAAAT 117348 Query 5639 GGATGCATAAGGATATTGTGTTCTGCCTGGAATACGAACATAAAGTTAAAAGTACCAGAG 5698 || ||||||||||| ||||| || ||||||||||| | ||| ||||| ||||||||||| Sbjct 117347 GGGTGCATAAGGATGTTGTGCTCAGCCTGGAATACAATCATGAAGTTGAAAGTACCAGAA 117288 Query 5699 ATACCAAGAGGCATACCATCACTGAAACTTCCCTGTCCGAAAGGGTATACTAAAAATACT 5758 || || ||||||||||| ||| || ||||| || || | || || | || || || Sbjct 117287 ATTCCTAGAGGCATACCGTCAGAAAAGCTTCCTTGACCAATTGGATAGATCAATAAAACA 117228 Query 5759 G-AGTAGGCTGCGGCAACCGGTGCTGAATATGCTAC 5793 | ||||| | || |||| || ||||||||||| || Sbjct 117227 GCAGTAG-CAGCTACAACAGGAGCTGAATATGCAAC 117193 >seq2016 Length=232386 Score = 95.1 bits (104), Expect = 4e-15 Identities = 102/134 (76%), Gaps = 1/134 (1%) Strand=Plus/Minus Query 5603 CCACCGAATACCCCAGCAACACCGAGCATGTGGAACGGATGCATAAGGATATTGTGTTCT 5662 |||| |||||| ||||| ||||| | |||||| || || |||| ||| || || || || Sbjct 155605 CCACTGAATACACCAGCTACACCTAACATGTGAAATGGGTGCAAAAG-ATGTTCTGCTCA 155547 Query 5663 GCCTGGAATACGAACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATACCATCACTG 5722 ||||||||||| | ||| || || ||||||| || | || |||||||||||||| Sbjct 155546 GCCTGGAATACAATCATGAACTTGAAAGTACGCGAACTTCCTGGAGGCATACCATCAGAA 155487 Query 5723 AAACTTCCCTGTCC 5736 || ||||| || || Sbjct 155486 AAGCTTCCTTGACC 155473 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 152457809420658